View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19117_low_12 (Length: 316)
Name: NF19117_low_12
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 25152104 - 25152225
Alignment:
| Q |
21 |
aaaacatacggatcgttcacgtcattcccaagcacagaaacaacactagtcaaatgccaaaaaatagtgatgtaaagcatgggcaacaagaaacaacaag |
120 |
Q |
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| T |
25152104 |
aaaacatacggatcgttcacatcattcccaagcacagaaacaacactagtcaaatgccaaaaaatagtgatgt-aagcatgggcaacaagaaacaacaag |
25152202 |
T |
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| Q |
121 |
agagacgaggttgctaagtgtaa |
143 |
Q |
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| T |
25152203 |
agagacgaggttgctaagtgtaa |
25152225 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 4181579 - 4181649
Alignment:
| Q |
50 |
aagcacagaaacaacactagtcaaatgccaaaaaatagtgatgtaaagcatgggcaacaagaaacaacaaga |
121 |
Q |
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|||||||||||||||||||| ||||||||| ||| ||| ||||||| |||| |||||| ||| |||||||| |
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| T |
4181579 |
aagcacagaaacaacactagccaaatgccacaaatcagttatgtaaa-catgagcaacatgaagcaacaaga |
4181649 |
T |
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