View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19117_low_19 (Length: 226)
Name: NF19117_low_19
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10843725 - 10843945
Alignment:
| Q |
1 |
cacatggaatagcttcaacttgaagaaatgagcaattttcatgctaaaccatgttacaaatcattttttctttgcttaaattcttataagcttacttaag |
100 |
Q |
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| T |
10843725 |
cacatggaatagcttcaacttgaagaaatgagcaattttcatgctaaaccatgttacaaatcattttttctttgcttaaattcttataagcttacttaag |
10843824 |
T |
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| Q |
101 |
ctgaaatggttaactccggtcgaaagtagtccaaggattaaactactaaaatcctact-tnnnnnnnnntatttgtcatttgtttttatactgcaaaaaa |
199 |
Q |
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| T |
10843825 |
ctgaaatggttaactccggtcgaaagtagtccaaggattaaactactaaagtcctactcaaaaaaaaaaaatttgtcatttgtttttatacggcaaaaaa |
10843924 |
T |
|
| Q |
200 |
ctacacagattgacaaaaaag |
220 |
Q |
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|||||||||| |||||||||| |
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| T |
10843925 |
ctacacagatcgacaaaaaag |
10843945 |
T |
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