View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19117_low_2 (Length: 692)
Name: NF19117_low_2
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_low_2 |
 | |
|
| [»] scaffold0428 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0428 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 97 - 675
Target Start/End: Complemental strand, 11949 - 11366
Alignment:
| Q |
97 |
aatatgaagcaaataagatgaaattgcaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttagatacacnnnnnnnnnn |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11949 |
aatatgaagcaaataagatgaaattgcaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttagatacacttcttttttt |
11850 |
T |
|
| Q |
197 |
--aatgcaattgcaacttcttcaacttgtgctgctactggtgtttgttctggcacttcttcggttgcagggctttcaggagagggaacttgatcgttttc |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
11849 |
ttaatgcaattgcaacttcttcaacttgtgctgctactggtgtttgttctggcacttcttcaggtgcaggactttcaggagagggaacttgataattttc |
11750 |
T |
|
| Q |
295 |
ttcttttacatctgtcgataaaggattcaaagttaaataaaactcctgtcataagaaaagnnnnnnnntcctccatctccatataggnnnnnnnn---tc |
391 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| || |
|
|
| T |
11749 |
ttctgttacatctgtcgatagaggattcaaagttaaataaaactcccttcataacaaaaagaaaaaaatcctccatctccatataggaaaaaaaaaaatc |
11650 |
T |
|
| Q |
392 |
ctctatccgttatgtgtaataagctaaataagctagctattatgtgtaatatcagtcttgttaaatagcagcgctattttgctacagcgagtggaatatg |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
11649 |
ctctatccgttatgtgtaataagctaaataagctagctattatgtgtaatatcattcttgttaaatagcagcgctatattgctacagcgagtggactatg |
11550 |
T |
|
| Q |
492 |
aacaaatttctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatggtggcgctataaaactattgtgtagcggtaagaaatt |
591 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11549 |
aacaaattgctattattcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatagtggcgctataaaactattgtgtagcggtaagaaatt |
11450 |
T |
|
| Q |
592 |
gttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgaattaagcataacctttattc |
675 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11449 |
gttactttcagcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgaattaagcataacctttattc |
11366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 675
Target Start/End: Original strand, 3977 - 4646
Alignment:
| Q |
1 |
tgagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataggttcaaatacatccttgtttatacatctttgagaattgaa-t |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
3977 |
tgagccgtttccataaactcttccaaacagtctcacaagtgcttatatcaatatataagttcaaatacatccttgtttatatatctttgagaattgaaat |
4076 |
T |
|
| Q |
100 |
atgaagcaaataagatgaaattgcaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttagatacacnnnnnnnnnn--a |
197 |
Q |
| |
|
| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4077 |
acgaagaaaataagatgaaattgtaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttagatacacttcttttttttta |
4176 |
T |
|
| Q |
198 |
atgcaattgcaacttcttcaacttgtgctgctactggtgtttgttctggcacttcttcggttgcagggctttcaggagagggaacttgatcgttttcttc |
297 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
4177 |
atgcaattgcaacttcttcaacttgtgatgctactggtgtttgttctggcacttcttcaggtgcaggactttcaggagtgggaacttgatcgttttcttc |
4276 |
T |
|
| Q |
298 |
ttttacatctgtcgataaaggattcaaagttaaataaaactcctgtcataagaaaa-gnnnnnnnntcctccatctccatataggnnnnnnnn--tcctc |
394 |
Q |
| |
|
| ||||||||||| ||| ||||||||| ||||||| ||||||| |||||| |||| | ||||||||||||||||||| ||||| |
|
|
| T |
4277 |
tgttacatctgtcaatagaggattcaaggttaaatgaaactcccttcataacaaaaagaaaaaaaatcctccatctccatataggaaaaaaaaaatcctc |
4376 |
T |
|
| Q |
395 |
tatccgttatgtgtaataagctaaataagctagctattatgtgtaatatcagtcttgttaaatagcagcgctattttgctacagcgagtggaatatgaac |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| |
|
|
| T |
4377 |
tatccgttatgtgtaataagctaaataagctagctattatgtgtaatatcagtcaagtggaata-----------ttgctacagcgagtggaatatgaac |
4465 |
T |
|
| Q |
495 |
aaatttctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatggtggcgctataaaactattgtgtagcggtaagaaattgtt |
594 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4466 |
aaattgctattgctcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatagtggtgctataaaactattgtgtagcggtaagaaattgtt |
4565 |
T |
|
| Q |
595 |
actttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgaattaagcataacctttattc |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
4566 |
actttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgcattaagcataacctatattc |
4646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 12895 - 12849
Alignment:
| Q |
198 |
atgcaattgcaacttcttcaacttgtgctgctactggtgtttgttct |
244 |
Q |
| |
|
||||||||||||| |||||||| |||||||| || |||||||||||| |
|
|
| T |
12895 |
atgcaattgcaacctcttcaacctgtgctgcgacaggtgtttgttct |
12849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 16)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 97 - 675
Target Start/End: Original strand, 33282303 - 33282886
Alignment:
| Q |
97 |
aatatgaagcaaataagatgaaattgcaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttagatacacnnnnnnnnnn |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33282303 |
aatatgaagcaaataagatgaaattgcaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttagatacacttcttttttt |
33282402 |
T |
|
| Q |
197 |
--aatgcaattgcaacttcttcaacttgtgctgctactggtgtttgttctggcacttcttcggttgcagggctttcaggagagggaacttgatcgttttc |
294 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
33282403 |
ttaatgcaattgcaacttcttcaacttgtgttgctactggtgtttgttctggcacttcttcaggtgcaggactttcaggagagggaacttgataattttc |
33282502 |
T |
|
| Q |
295 |
ttcttttacatctgtcgataaaggattcaaagttaaataaaactcctgtcataagaaaagnnnnnnnntcctccatctccatataggnnnnnnnn---tc |
391 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||| ||||||| ||||||| |||||| |||| ||||||||||||||||||| || |
|
|
| T |
33282503 |
ttctgttacatctgtcaatagaggattcaaggttaaatgaaactcccttcataacaaaaagaaaaaaatcctccatctccatataggaaaaaaaaaaatc |
33282602 |
T |
|
| Q |
392 |
ctctatccgttatgtgtaataagctaaataagctagctattatgtgtaatatcagtcttgttaaatagcagcgctattttgctacagcgagtggaatatg |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
33282603 |
ctctatccgttatgtgtaataagctaaataagctagctattatgtgtaatatcattcttgttaaatagcagcgctatattgctacagcgagtggactatg |
33282702 |
T |
|
| Q |
492 |
aacaaatttctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatggtggcgctataaaactattgtgtagcggtaagaaatt |
591 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33282703 |
aacaaattgctattattcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatagtggcgctataaaactattgtgtagcggtaagaaatt |
33282802 |
T |
|
| Q |
592 |
gttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgaattaagcataacctttattc |
675 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
33282803 |
gttactttcagcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgcattaagcataacctatattc |
33282886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 155 - 675
Target Start/End: Original strand, 33260069 - 33260590
Alignment:
| Q |
155 |
aatgccagtttgtctattagagttagatacacnnnnnnnnnnaatgcaattgcaacttcttcaacttgtgctgctactggtgtttgttctggcacttctt |
254 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33260069 |
aatgccagtttgtctgttagagttagatacacttttttttt-aatgcaattgcaacttcttcaacttgtgctgctactggtgtttgttctggcacttctt |
33260167 |
T |
|
| Q |
255 |
cggttgcagggctttcaggagagggaacttgatcgttttcttcttttacatctgtcgataaaggattcaaagttaaataaaactcctgtcataagaaaa- |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||| ||||||| |||||| |||| |
|
|
| T |
33260168 |
cggttgcagggctttcaggagagggaacttgatcgttttcttctgttacatctgtcaatagaggattcaaggttaaatgaaactcccttcataacaaaaa |
33260267 |
T |
|
| Q |
354 |
gnnnnnnnntcctccatctccatataggnnnnnnnn-tcctctatccgttatgtgtaataagctaaataagctagctattatgtgtaatatcagtcttgt |
452 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33260268 |
gaaaaaaaatcctccatctccatataggaaaaaaaaatcctctatccgttatgtgtaataagctaaataagctagctattatgtgtaatatcagtcttgt |
33260367 |
T |
|
| Q |
453 |
taaatagcagcgctattttgctacagcgagtggaatatgaacaaatttctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagcatcta |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33260368 |
taaatagcagcgctattttgctacagcgagtggaatatgaacaaattgctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagcatcta |
33260467 |
T |
|
| Q |
553 |
tggtggcgctataaaactattgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaa |
652 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33260468 |
tagtggtgctataaaactattgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaa |
33260567 |
T |
|
| Q |
653 |
tgaattaagcataacctttattc |
675 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33260568 |
tgaattaagcataacctttattc |
33260590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 33259891 - 33260069
Alignment:
| Q |
3 |
agccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataggttcaaatacatccttgtttatacatctttgagaattgaatatg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33259891 |
agccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaatacatccttgtttatacatctttgagaattgaatatg |
33259990 |
T |
|
| Q |
103 |
aagcaaataagatgaaattgcaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttaga |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33259991 |
aagcaaataagatgaaattgcaacctttgctcaggacttcatctaaagttgtaatgccagtttgtctgttagagttaga |
33260069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 33385600 - 33385965
Alignment:
| Q |
1 |
tgagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataggttcaaatacatccttgtttatacatctttgagaattg-aat |
99 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||||| || ||| |||||||| ||||||||||||||||||||| |||| || ||| |
|
|
| T |
33385600 |
tgagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaatgcatccttgtttatacatctttcagaaatgaaat |
33385699 |
T |
|
| Q |
100 |
atgaagcaaataagatgaaattgcaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttagatacac-----nnnnnnnn |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||| | | |||||| || ||||||| ||||||||||||||| | |
|
|
| T |
33385700 |
atgaaataaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgtttt |
33385799 |
T |
|
| Q |
195 |
nnaatgcaattgcaactt------cttcaacttgtgctgctactggtgtttgttctggcacttcttcggttgcagggctttcaggagagggaacttgatc |
288 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| || |
|
|
| T |
33385800 |
ttaatgcaattgcaacttcttcaccttcaacttgtactgctactggtgtttgttctggcacttcttcagttggaggactttcaggagagggaactttatt |
33385899 |
T |
|
| Q |
289 |
gttttcttcttttacatctgtcgataaaggattcaaagttaaataaaactcctgtcataagaaaag |
354 |
Q |
| |
|
|||||||| |||||| | || ||| | ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
33385900 |
cttttcttcagttacatttatccatagaagattcaaagttaaataaaactcccttcataacaaaag |
33385965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 471 - 658
Target Start/End: Original strand, 33386143 - 33386330
Alignment:
| Q |
471 |
tgctacagcgagtggaatatgaacaaatttctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatggtggcgctataaaact |
570 |
Q |
| |
|
||||| || ||||||||| |||||||||| |||||||||| |||||||||| || || ||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
33386143 |
tgctatagagagtggaatttgaacaaattgctattgttcaaaattacgatatttggttcaaaatgttgtgaaatagcctctatagtggcgctataaaact |
33386242 |
T |
|
| Q |
571 |
attgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgaatt |
658 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
33386243 |
attgtgtagcggtaacaaattgttactttcggcgatacaagaatgacaacactaattcagtcaagcaagcatgatttaaaaatgaatt |
33386330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 33416581 - 33416700
Alignment:
| Q |
212 |
tcttcaacttgtgctgctactggtgtttgttctggcacttcttcggttgcagggctttcaggagagggaacttgatcgttttcttcttttacatctgtcg |
311 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| |||| ||||| || ||||| |||||||||||||||||||||| ||||||||| ||| ||||| | |
|
|
| T |
33416581 |
tcttcaacttgtgctgatacaggtgtttgttcttgcacctcttcagtggcaggactttcaggagagggaacttgattgttttcttcagttaaatctgcgg |
33416680 |
T |
|
| Q |
312 |
ataaaggattcaaagttaaa |
331 |
Q |
| |
|
||| ||||||| |||||||| |
|
|
| T |
33416681 |
atagaggattcgaagttaaa |
33416700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 198 - 338
Target Start/End: Original strand, 33397055 - 33397198
Alignment:
| Q |
198 |
atgcaattgcaacttcttcaacttgtgctgctactggtgtttgttctg---gcacttcttcggttgcagggctttcaggagagggaacttgatcgttttc |
294 |
Q |
| |
|
||||||||||||| |||||||||||| | | || ||| |||||||| |||||||||| || ||||| |||||||||||||||||||| || |||| |
|
|
| T |
33397055 |
atgcaattgcaacctcttcaacttgtacggtgacaggtatttgttcttcttgcacttcttcagtggcaggactttcaggagagggaacttgttcagtttc |
33397154 |
T |
|
| Q |
295 |
ttcttttacatctgtcgataaaggattcaaagttaaataaaact |
338 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
33397155 |
ttctgttacatctgttaataaaggatccaaagttaaagaaaact |
33397198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 33355463 - 33355510
Alignment:
| Q |
97 |
aatatgaagcaaataagatgaaattgcaacctttgctcaggccttcat |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
33355463 |
aatatgaagcaaataagatgaaattgcaacctttgctccggctttcat |
33355510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 31564299 - 31564219
Alignment:
| Q |
249 |
cttcttcggttgcagggctttcaggagagggaacttgatcgttttcttcttttacatctgtcgataaaggattcaaagttaa |
330 |
Q |
| |
|
||||||| || ||||| || |||||||||||| ||| ||||||||||||| ||||||||||| ||| | ||||||||||||| |
|
|
| T |
31564299 |
cttcttcagtggcaggactctcaggagagggaccttaatcgttttcttctgttacatctgtc-atacatgattcaaagttaa |
31564219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 24631905 - 24631856
Alignment:
| Q |
7 |
gtttccataaactcttccaaacagtttggcaagtgcttatatcaatatat |
56 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
24631905 |
gtttccataaactcttccaaatagtttcacaagtgcttatatcagtatat |
24631856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 582
Target Start/End: Original strand, 2732973 - 2733032
Alignment:
| Q |
523 |
ttagtgcaaaatgttgtgaaatagcatctatggtggcgctataaaactattgtgtagcgg |
582 |
Q |
| |
|
||||| ||||||||||| |||||||| |||| | |||||||||| |||||||| |||||| |
|
|
| T |
2732973 |
ttagtacaaaatgttgtcaaatagcagctatagaggcgctataatactattgtatagcgg |
2733032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 33416473 - 33416532
Alignment:
| Q |
88 |
tgagaattgaa-tatgaagcaaataagatgaaattgcaacctttgctcaggccttcatct |
146 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| | ||||||| ||| |||||||||| |
|
|
| T |
33416473 |
tgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatct |
33416532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 33281357 - 33281403
Alignment:
| Q |
198 |
atgcaattgcaacttcttcaacttgtgctgctactggtgtttgttct |
244 |
Q |
| |
|
||||||||||||| |||||||| |||||||| || |||||||||||| |
|
|
| T |
33281357 |
atgcaattgcaacctcttcaacctgtgctgcgacaggtgtttgttct |
33281403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 33408005 - 33408051
Alignment:
| Q |
198 |
atgcaattgcaacttcttcaacttgtgctgctactggtgtttgttct |
244 |
Q |
| |
|
||||||||||||| |||||||| |||||||| || |||||||||||| |
|
|
| T |
33408005 |
atgcaattgcaacctcttcaacatgtgctgcgacaggtgtttgttct |
33408051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 675
Target Start/End: Original strand, 33416873 - 33416923
Alignment:
| Q |
625 |
attcaatcaagcaagcaggatttgaaaatgaattaagcataacctttattc |
675 |
Q |
| |
|
||||||||| | |||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
33416873 |
attcaatcaggaaagcagaatttgaaaaggaatgaagcataacctttattc |
33416923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 31564458 - 31564378
Alignment:
| Q |
103 |
aagcaaataagatgaaattgcaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttagata |
183 |
Q |
| |
|
|||||||||||||||||||| |||| || ||| ||||| ||| ||| |||||||| ||||||| |||||| ||||||| |
|
|
| T |
31564458 |
aagcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagata |
31564378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 7e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 17443607 - 17443261
Alignment:
| Q |
1 |
tgagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataggttcaaatacatccttgtttatacatctttgagaattg-aat |
99 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17443607 |
tgagctgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatccttgtttatacatctttgagaattgaaat |
17443508 |
T |
|
| Q |
100 |
atgaagcaaataagatgaaattgcaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttagatacac----nnnnnnnnn |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||| ||||||| ||||||||||||||| | |
|
|
| T |
17443507 |
ttgaagcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttc |
17443408 |
T |
|
| Q |
196 |
naatgcaattgcaacttc------ttcaacttgtgctgctactggtgtttgttctggcacttcttcggttgcagggctttcaggagagggaacttgatcg |
289 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| ||||||||| |||||||||||| |||||| || | |
|
|
| T |
17443407 |
aaatgcaattgcaacttcttcacgttcaacttgtgccgctgctggtgtttgttctggcacttctttggttgcaggactttcaggagagagaacttcattg |
17443308 |
T |
|
| Q |
290 |
ttttcttcttttacatctgtcgataaaggattcaaagttaaataaaa |
336 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
17443307 |
ttttcttctgttacatctgttcatagaggattcaaagttaaataaaa |
17443261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 444 - 667
Target Start/End: Complemental strand, 17443072 - 17442850
Alignment:
| Q |
444 |
cagtcttgttaaatagcagcgctattttgctacagcgagtggaatatgaacaaatttctattgttcagaattacgatagttagtgcaaaatgttgtgaaa |
543 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||| |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17443072 |
cagtcttgttaaatagcagccctatagtgctatagcaagtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaa |
17442973 |
T |
|
| Q |
544 |
tagcatctatggtggcgctataaaactattgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcagg |
643 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | | || ||| ||||||||| | |||||| |||||||||||||||||||| |||| ||||||| |
|
|
| T |
17442972 |
tagcatctatagtggcgctataaaactattgtgt-gaaggaacaaacagttactttcagggatacatgattgacaacactgattcaaacaagaaagcagg |
17442874 |
T |
|
| Q |
644 |
atttgaaaatgaattaagcataac |
667 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
17442873 |
attggaaaatgaattaagcataac |
17442850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University