View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19117_low_20 (Length: 226)
Name: NF19117_low_20
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_low_20 |
 | |
|
| [»] chr6 (9 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 5350994 - 5351213
Alignment:
| Q |
7 |
tctataacagcacatgtaagtggatacaattatttaatttgataccggtataaaatacttcaaaatcaaaataatgaaaattgtcttccaaattttcaca |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5350994 |
tctataacagcacatgtaagtgtatacaattatttaatttgataccggtataaaatacttcaaaatcaaaataatgaaaattgtcttccaaattttcaca |
5351093 |
T |
|
| Q |
107 |
aagtttgctatcagtaattgacagcttacttgacacatgtgcaagcatgaggaagaattatagtctttacaattttttcaagacatacttcttattttgc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351094 |
aagtttgctatcagtaattgacagcttacttgaaacatgtgcaagcatgaggaagaattatagtctttacaattttttcaagacatacttcttattttgc |
5351193 |
T |
|
| Q |
207 |
ttgcttttacataatttgat |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5351194 |
ttgcttttacataatttgat |
5351213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 5102093 - 5101884
Alignment:
| Q |
7 |
tctataacagcacatgtaagtggatacaattatttaatttgataccggtataaaatacttcaaaatcaaaataatgaaaattgtcttccaaattttcaca |
106 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| |||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5102093 |
tctataacaacacatgtaagtgtatacaattattt-----gatataggtgtaaaatacttaaaaatcaaaataatgaaaattgtcttccaaattttcaca |
5101999 |
T |
|
| Q |
107 |
aagtttgctatcagtaattgacagcttacttgacacatgtgcaagcatgaggaagaattatagtctttacaattttttcaagacatacttcttattttgc |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||| |||| ||||||||| | |
|
|
| T |
5101998 |
aagtttgctatcagtcattgacagcttacttgacacatgtgcaagcatgtggaagaattatagtctgtgctattttttcaagatatac-tcttatttttc |
5101900 |
T |
|
| Q |
207 |
ttgcttttacataatt |
222 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
5101899 |
ttgcttttaaataatt |
5101884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 5137145 - 5136946
Alignment:
| Q |
7 |
tctataacagcacatgtaagtggatacaattatttaatttgataccggtataaaatacttcaaaatcaaaataatgaaaattgtcttccaaattttcaca |
106 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| |||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5137145 |
tctataacaacacatgtaagtgtatacaattattt-----gatataggtgtaaaatacttaataatcaaaataatgaaaattgtcttccaaattttcaca |
5137051 |
T |
|
| Q |
107 |
aagtttgctatcagtaattgacagcttacttgacacatgtgcaagcatgaggaagaattatagtctttacaattttttcaagacatacttcttattttgc |
206 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||| |||| ||||||||| | |
|
|
| T |
5137050 |
aagtttgctat----------cagcttacttgacacatgtgcaagcatgtggaagaattatagtctgtgctattttttcaagatatac-tcttatttttc |
5136962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 5426521 - 5426722
Alignment:
| Q |
7 |
tctataacagcacatgtaagtggatacaattatttaatttgataccggtataaaatacttcaaaatcaaaataatgaaaattgtcttccaaattttcaca |
106 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||| || | || ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5426521 |
tctataacagcacatgtaattgtatacaattcttt-----gacataggcataaaatacttaaaaatcaaaataatgaaaattgtcttccaaattttcaca |
5426615 |
T |
|
| Q |
107 |
aagtttgctatcagtaattgacagcttacttgacacatgtgcaagcatgaggaagaattatagtctttacaa-ttttttcaagacatact-tcttatttt |
204 |
Q |
| |
|
||||||||||| | | |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| | ||| ||||||||| |
|
|
| T |
5426616 |
aagtttgctattattcattgacagcttacttgacacatgt----------ggaagaatcatagtctttacaatttttttcaagatacactctcttatttt |
5426705 |
T |
|
| Q |
205 |
gcttgcttttacataat |
221 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5426706 |
gcttgcttttacataat |
5426722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 5333390 - 5333509
Alignment:
| Q |
84 |
aaattgtcttccaaattttcacaaagtttgctatcagtaattgacagcttacttgacacatgtgcaagcatgaggaagaattatagtctttacaattttt |
183 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5333390 |
aaattgtcttccaaattctca----gtttgctatcagtcattgacaacttactttacacatgtgcaagcatgtggaagaattatagtctttacaattttt |
5333485 |
T |
|
| Q |
184 |
tcaagacatact-tcttattttgc |
206 |
Q |
| |
|
|||||| ||||| ||||||||||| |
|
|
| T |
5333486 |
tcaagatatactctcttattttgc |
5333509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 5097449 - 5097560
Alignment:
| Q |
84 |
aaattgtcttccaaattttcacaaagtttgctatcagtaattgacagcttacttgacacatgtgcaagcatgaggaagaattatagtctttacaattttt |
183 |
Q |
| |
|
|||||||||||||| || | |||| |||||||| | | ||||||||||||| |||||||||| ||||| || |||| |||||| || | |||| ||||| |
|
|
| T |
5097449 |
aaattgtcttccaagttctatcaaattttgctataatttattgacagcttacgtgacacatgttcaagcgtgtggaaaaattatggtatatacatttttt |
5097548 |
T |
|
| Q |
184 |
tcaagacatact |
195 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
5097549 |
tcaagatatact |
5097560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 5156949 - 5156824
Alignment:
| Q |
84 |
aaattgtcttccaaattttcacaaagtttgctatcagtaattgacagcttacttgacacatgtgcaagcatgaggaagaattatagtctttacaattttt |
183 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||| | ||||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
5156949 |
aaattgtcttccaaattttca--aagtttgctatcagtcattgataacttactttacacatgt----------ggaagaat--tagtctttacaattttt |
5156864 |
T |
|
| Q |
184 |
tcaagacatact-tcttattttgcttgcttttacataatt |
222 |
Q |
| |
|
|||||| ||||| ||||||| ||| | | ||||||||||| |
|
|
| T |
5156863 |
tcaagatatactctcttattgtgcatacgtttacataatt |
5156824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 5448220 - 5448252
Alignment:
| Q |
53 |
ggtataaaatacttcaaaatcaaaataatgaaa |
85 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
5448220 |
ggtataaaatacttaaaaatcaaaataatgaaa |
5448252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 5448334 - 5448366
Alignment:
| Q |
157 |
ggaagaattatagtctttacaattttttcaaga |
189 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
5448334 |
ggaagaattatagtctttacaatttcttcaaga |
5448366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University