View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19117_low_21 (Length: 214)

Name: NF19117_low_21
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19117_low_21
NF19117_low_21
[»] chr7 (18 HSPs)
chr7 (8-198)||(4711525-4711715)
chr7 (8-144)||(4696697-4696833)
chr7 (8-145)||(4653948-4654085)
chr7 (8-144)||(4637309-4637445)
chr7 (8-197)||(4845454-4845655)
chr7 (8-145)||(4864374-4864514)
chr7 (8-133)||(4783353-4783478)
chr7 (8-133)||(4815782-4815907)
chr7 (8-146)||(4673155-4673293)
chr7 (77-139)||(4631451-4631513)
chr7 (8-49)||(4644159-4644200)
chr7 (77-138)||(4644216-4644277)
chr7 (156-198)||(4644307-4644349)
chr7 (156-198)||(4673315-4673357)
chr7 (156-198)||(4696631-4696673)
chr7 (156-197)||(4783277-4783318)
chr7 (156-197)||(4815706-4815747)
chr7 (156-197)||(4864537-4864578)
[»] chr4 (1 HSPs)
chr4 (8-116)||(18925280-18925385)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 4711715 - 4711525
Alignment:
Q  8 gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711715 gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg 4711616  T
Q  108 gtttgatttgaatgcaatattctttggtgattttttccttctcataataagggctgaagtttttaagaagggtaagattgttgtttacttt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711615 gtttgatttgaatgcaatattctttggtgattttttccttctcataataagggctgaagtttttaagaagggtaagattgttgtttacttt 4711525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 4696833 - 4696697
Alignment:
Q  8 gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg 107  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||||||| ||| |||||||||||    
T  4696833 gaaggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtttatgttgctgggaatgaaagttatgtttaacttctcatttg 4696734  T
Q  108 gtttgatttgaatgcaatattctttggtgattttttc 144  Q
    ||||| |||||||||||||||||||||||||||||||    
T  4696733 gtttggtttgaatgcaatattctttggtgattttttc 4696697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 4653948 - 4654085
Alignment:
Q  8 gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg 107  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||| ||| |    
T  4653948 gaaggcatagacacaacttcaattccattaatgaaagcataataaggatttgaatggtttgtgttgttgggaatgaaagttatgtttagcttcttattcg 4654047  T
Q  108 gtttgatttgaatgcaatattctttggtgattttttcc 145  Q
    ||| || ||| ||||||||||||||||||||| |||||    
T  4654048 gttggacttggatgcaatattctttggtgattgtttcc 4654085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 4637309 - 4637445
Alignment:
Q  8 gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg 107  Q
    |||||||| ||||||| |||||| |||||||| ||||||||| |||||||||| || |||||| |||| ||||||||||||||| ||| ||| |||||||    
T  4637309 gaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggtttatgctgttaggaatgaaagttatgtttaacttttcatttg 4637408  T
Q  108 gtttgatttgaatgcaatattctttggtgattttttc 144  Q
    |||||||||| ||||||||||||||||||||||||||    
T  4637409 gtttgatttgtatgcaatattctttggtgattttttc 4637445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 4845655 - 4845454
Alignment:
Q  8 gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg 107  Q
    |||||||| ||||||| |||||||||||||| |||||||||| |||||||  | |  ||||||||||| |||| |||||||||| |||||||| ||||||    
T  4845655 gaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaaagaaagttatgtttagcttcccatttg 4845556  T
Q  108 gtttgatttgaatgcaatattctttggtgattttttccttctcataat------------aagggctgaagtttttaagaagggtaagattgttgtttac 195  Q
    ||||||| |||||||||||||||||||| |||||||||  ||| | ||            ||||||||||||||||||||||||||||||||||||||||    
T  4845555 gtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgtttac 4845456  T
Q  196 tt 197  Q
    ||    
T  4845455 tt 4845454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 4864374 - 4864514
Alignment:
Q  8 gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtt---tggaatgaaagttatgcttagcttctcat 104  Q
    |||||||||||||| | ||| ||||| |||||||| ||||||||||||||||| |||||||| || ||    ||||||||||||||| ||||||||||||    
T  4864374 gaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctcat 4864473  T
Q  105 ttggtttgatttgaatgcaatattctttggtgattttttcc 145  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  4864474 ttgatttgatttgaatgcaatattctttggtgattttttcc 4864514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 4783478 - 4783353
Alignment:
Q  8 gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg 107  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |  | || ||| ||||||| ||||||||||||||| |||||||||| ||||    
T  4783478 gaaggcatagacacaacttcgattccgttaatgaaagcataactaggaatcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtttg 4783379  T
Q  108 gtttgatttgaatgcaatattctttg 133  Q
    |||||||||| ||| |||||||||||    
T  4783378 gtttgatttggatggaatattctttg 4783353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 4815907 - 4815782
Alignment:
Q  8 gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg 107  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |  | || ||| ||||||| ||||||||||||||| |||||||||| ||||    
T  4815907 gaaggcatagacacaacttcgattccgttaatgaaagcataactaggactcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtttg 4815808  T
Q  108 gtttgatttgaatgcaatattctttg 133  Q
    |||||||||| ||| |||||||||||    
T  4815807 gtttgatttggatggaatattctttg 4815782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 4673155 - 4673293
Alignment:
Q  8 gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg 107  Q
    |||||||| |||||||||||||||||||||||||||||||| | |  |||||| |  || ||| || ||||||||||| ||||| ||||||||||||| |    
T  4673155 gaaggcattgacacaatttcgattccgttaatgaaagcatatttaacatttgatttgttcatgatgcttggaatgaaatttatgtttagcttctcattgg 4673254  T
Q  108 gtttgatttgaatgcaatattctttggtgattttttcct 146  Q
    | |||||||| || ||| |||||||||||||| ||||||    
T  4673255 gcttgatttggatacaaaattctttggtgattgtttcct 4673293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 4631451 - 4631513
Alignment:
Q  77 ggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgatt 139  Q
    ||||||||||||||| ||||||||||||||||    ||||| |||||||||||||||||||||    
T  4631451 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 4631513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 4644159 - 4644200
Alignment:
Q  8 gaaggcatagacacaatttcgattccgttaatgaaagcataa 49  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  4644159 gaaggcatagacacaacttcgattccgttaatgaaagcataa 4644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 4644216 - 4644277
Alignment:
Q  77 ggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgat 138  Q
    ||||||||||||||| ||||||||||||||| ||| ||||| |||||||| |||||| ||||    
T  4644216 ggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaatactctttgatgat 4644277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 4644307 - 4644349
Alignment:
Q  156 aagggctgaagtttttaagaagggtaagattgttgtttacttt 198  Q
    ||||| ||||||||| ||||||||| |||||||||||||||||    
T  4644307 aagggttgaagttttgaagaagggtgagattgttgtttacttt 4644349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 4673315 - 4673357
Alignment:
Q  156 aagggctgaagtttttaagaagggtaagattgttgtttacttt 198  Q
    ||||| ||||||||||||||||||||| ||||||||| |||||    
T  4673315 aagggttgaagtttttaagaagggtaatattgttgttaacttt 4673357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 4696673 - 4696631
Alignment:
Q  156 aagggctgaagtttttaagaagggtaagattgttgtttacttt 198  Q
    ||||| |||||||||||||||||||||  ||||||||||||||    
T  4696673 aagggttgaagtttttaagaagggtaacgttgttgtttacttt 4696631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 4783318 - 4783277
Alignment:
Q  156 aagggctgaagtttttaagaagggtaagattgttgtttactt 197  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  4783318 aagggttgaagtttttaagaagggtaatgttgttgtttactt 4783277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 4815747 - 4815706
Alignment:
Q  156 aagggctgaagtttttaagaagggtaagattgttgtttactt 197  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  4815747 aagggttgaagtttttaagaagggtaatgttgttgtttactt 4815706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 4864537 - 4864578
Alignment:
Q  156 aagggctgaagtttttaagaagggtaagattgttgtttactt 197  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  4864537 aagggttgaagtttttaagaagggtaattttgttgtttactt 4864578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 18925385 - 18925280
Alignment:
Q  8 gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg 107  Q
    |||||||| ||||| || || |||||||| ||||||||||||   |  ||||  ||||||||| |||||||||||||||||||  ||| ||||||| |||    
T  18925385 gaaggcatggacacgatctcaattccgttgatgaaagcataa---gcctttggttgatttatggtgtttggaatgaaagttatatttaacttctcagttg 18925289  T
Q  108 gtttgattt 116  Q
    |||| ||||    
T  18925288 gtttcattt 18925280  T

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