View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19117_low_3 (Length: 591)
Name: NF19117_low_3
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 122 - 359
Target Start/End: Original strand, 2928670 - 2928908
Alignment:
| Q |
122 |
tagatggaattaaaatcaaagatgtttttaattaatttcctcttg--atgaaacaaattaggatgcatattgacttcacctgaagaaagatgacaatttc |
219 |
Q |
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| T |
2928670 |
tagaaggaattaaaatgtaagatgttcttaattaattacttcttgtgatgaaacaaatgaggatgcatatgaacttcagtcaaagaaagatgacaacttc |
2928769 |
T |
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| Q |
220 |
tgttaaaattggctatagaatcatgcaattagtaacagaaggtgttatctctcgtgcgattgaagtctccgaacaaatcttctacttttatacctttttc |
319 |
Q |
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| T |
2928770 |
tgttaaaattg-ctataaaatcatgtcattagtaatagaaggtgtcatctctcctgcgactaaagtccctgaacatatgttatacttttacaccttttca |
2928868 |
T |
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| Q |
320 |
tgcatatatgcatattatgtttctttgctcaaagaagtta |
359 |
Q |
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| T |
2928869 |
tgcatatatgcatattatgttcctttgctcaaagaagtta |
2928908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 498 - 570
Target Start/End: Complemental strand, 2996386 - 2996314
Alignment:
| Q |
498 |
ggttggtggtggtagttttttagagttttcaagaaggcatctctttatggaatctttcatctccttttgcctt |
570 |
Q |
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| T |
2996386 |
ggttggtggtggtagttttttagagttttcaagaaggcgtctctttatggaatctttcgtctccttttgcctt |
2996314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 149 - 357
Target Start/End: Complemental strand, 2993224 - 2993017
Alignment:
| Q |
149 |
ttaattaatttcctcttgatgaaacaaattaggatgcatattgacttcacctgaagaaagatgacaatttctgttaaaattggctatagaatcatgcaat |
248 |
Q |
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| T |
2993224 |
ttaattaatcaccttttaatgaaacaaattaagatgcatatggacttcagtcgaagaaagatgacaactcctgttaaaattgg--ttgcaaccatgccat |
2993127 |
T |
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| Q |
249 |
tagtaacagaaggtgttatctctcgtgcgattgaagtctccgaacaaatcttctacttttatacctttttctgcatatatgcata-ttatgtttctttgc |
347 |
Q |
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| T |
2993126 |
tagaaacagaaggtgtcatctctcctgcgactgaagtccgtgtacatatcttctacacttgaaccatttcttgcatatatgtatatttatgttcctttgc |
2993027 |
T |
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| Q |
348 |
tcaaagaagt |
357 |
Q |
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|||||||||| |
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| T |
2993026 |
tcaaagaagt |
2993017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 3001516 - 3001251
Alignment:
| Q |
18 |
caataagtagtgatgtaattaccgcaaacaaaacaatagatgaattaaactgtagtcttagttgctaattaatgcctcccccaaagtctgcatgtgnnnn |
117 |
Q |
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| T |
3001516 |
caataagtagtaatgtacttaccacaaataaaacaacagatgaattaagatgttgtggtagttgttaatctatgtgtcccctaaagtctgtatgtgaagg |
3001417 |
T |
|
| Q |
118 |
nnnn-tagatggaattaaaatcaaagatgtttttaattaatttcctcttgatgaaacaaattaggatgcatattgacttcacctgaagaaagatgacaat |
216 |
Q |
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|| | ||||||||||| |||||||| ||| |||||| |||||||||||||||| ||| ||||||||| |||| || |||||||||||||| |
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| T |
3001416 |
aaaaataaaaggaattaaaatgtaagatgttcttacttaattacctcttgatgaaacaagttaagatgcatatggactacagtccaagaaagatgacaac |
3001317 |
T |
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| Q |
217 |
ttctgttaaaattggctatagaatcatgcaattagtaacagaaggtgttatctctcgtgcgattgaagt |
285 |
Q |
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| T |
3001316 |
tactattaaaattggttatgcaatcatactattagtaacaga---tgtcatctctcctacgattgaagt |
3001251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 2993364 - 2993298
Alignment:
| Q |
20 |
ataagtagtgatgtaattaccgcaaacaaaacaatagatgaattaaactgtagtcttagttgctaat |
86 |
Q |
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| T |
2993364 |
ataagtagtaatgtacttaccacaaagaaaacaacagatgaattaacctgcagtggtagttgctaat |
2993298 |
T |
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