View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19117_low_4 (Length: 566)
Name: NF19117_low_4
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 34142139 - 34141715
Alignment:
| Q |
1 |
tgagcacagagaaggaaaggttttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaattcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34142139 |
tgagcacagagaaggaaaggttttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaaaccc |
34142040 |
T |
|
| Q |
101 |
ttcaaaatataggccatataaatggggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34142039 |
ttcaaaatataggccatataaatggggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattat |
34141940 |
T |
|
| Q |
201 |
aagctaccctagagctagacagtttaacaaaataatggtcatgcaaacatgtgttcttagtgcatatgttaaggaattcaatgtgaaagatttatcgtag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
34141939 |
aagctaccctagagctagacagtttaacaaaataatggtca----------tgtttttagtgcatatgttaaggaattaaatgtgaaagatttatcttag |
34141850 |
T |
|
| Q |
301 |
aaattgtgcattcaatatttaaacgtttaaaaacaaattatacttttaatttcattcacatgtggcttaaaaacacatattaacatttttct-nnnnnnn |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34141849 |
aaattgtgcattcaatatttaaacgtttaaaaacaaattatacttttaatttcattcacatgtggcttaaaaacacatattaacatttctctaaaaaaaa |
34141750 |
T |
|
| Q |
400 |
ntcacttagcccatgcttgtacgcaatcaaagatt |
434 |
Q |
| |
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| T |
34141749 |
atcacttagcccatgtttgtacgcaatcaaagatt |
34141715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 34136499 - 34136301
Alignment:
| Q |
9 |
gagaaggaaaggttttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaattccttcaaaat |
108 |
Q |
| |
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||||| || |||||||||||||| ||||| || |||||| |||| |||||| |||| ||||| || ||||||| |||| |||||| || |||||| |
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| T |
34136499 |
gagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagcttacaaataagcaaaactctccaaaat |
34136400 |
T |
|
| Q |
109 |
ataggccatataaatggggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattataagctac |
207 |
Q |
| |
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||| ||||||||||||||| |||||| |||| |||||| | |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34136399 |
ataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaagatgaggagaatcttcaaatttatcattataagctac |
34136301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 34139451 - 34139259
Alignment:
| Q |
9 |
gagaaggaaaggttttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaattccttcaaaat |
108 |
Q |
| |
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||||| ||||| ||||||||||| |||||||| |||||||||||| |||| |||| ||||| || |||||||| || ||||||| |||||||||| |
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| T |
34139451 |
gagaaagaaagattttctattccattctttttcaacccaggatatgatattgaaatcaagcctttggaggagcttattaacgagcaaaacccttcaaaat |
34139352 |
T |
|
| Q |
109 |
ataggccatataaatggggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattata |
201 |
Q |
| |
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||| ||| ||||||||||| || ||| ||| || |||| | |||| || ||||||||||||| | |||||||||||||||||||||||||| |
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| T |
34139351 |
ataagccttataaatggggtaaattttatgtccatagaacaaacagtaacttcaagaaacaagaagaggagaatcttcaaatttatcattata |
34139259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 34130813 - 34130619
Alignment:
| Q |
9 |
gagaaggaaaggttttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaattccttcaaaat |
108 |
Q |
| |
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||||| ||||||||||| || ||||||||||| ||||| | | | ||| ||| |||||||||| | || ||||| | ||||||| ||| ||| |||||| |
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| T |
34130813 |
gagaaagaaaggttttcaatccccttctttttcttccctgcacacgacactgtagtcaaacctctcgaggagctgacaaatgaggaaaaccctccaaaat |
34130714 |
T |
|
| Q |
109 |
ataggccatataaatggggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattataag |
203 |
Q |
| |
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| || ||||| || ||||||||||||||||| ||||||| |||||| || |||| || | |||||||| |||||||||||||||||||| |
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| T |
34130713 |
acagaccatacaattggggaaagtttcttgtcaacagaaagagtagcaatttcgagaagaaaaaggtggagaacattcaaatttatcattataag |
34130619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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