View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19117_low_6 (Length: 490)
Name: NF19117_low_6
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 12 - 472
Target Start/End: Complemental strand, 36923730 - 36923270
Alignment:
| Q |
12 |
atgaagaacaaaacaacaaatatagaagcctaacctgatttggcaggttctctgccagttcttcccctgcgagggtaaggatattcagcagaccctccaa |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36923730 |
atgaagaacaaaacaacaaaaatagaagcctaacctgatttggcaggttctctgccagttcttcccctgcgagggtaaggatattcagcagaccctccaa |
36923631 |
T |
|
| Q |
112 |
gaataggacgagaatgttcaagacctttatcaggatttcccaaatcattgtagcatgcataatcataaaccctatcccacttttcaagcttgccttttcc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36923630 |
gaataggacgagaatgttcaagacctttatcaggatttcccaaatcattgtagcatgcataatcataaaccctatcccacttttcaagctggccttttcc |
36923531 |
T |
|
| Q |
212 |
atcacctcttaaagtctctagctcttcttctctgtacttaagtagtgttgtcggtgtttcacttggaagatatgtctacaaataatagaaattacaaaat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36923530 |
atcacctcttaaagtctctagctcttcttctctgtacttaagtagtgttgtcggagtttcacttggaagatatgtctacaaataatagaaattacaaaat |
36923431 |
T |
|
| Q |
312 |
atgttggagaatgtaacatacattgcaaaggtatggctataatatagttactattacttaaagttgtctttgtagttataccttgttggagaagaaaatg |
411 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36923430 |
atgatggagaatgtaacatacattgcaaaggtatggctataatatagttactattacttaaagttgtctttgtagttataccttgttggagaagaaaatg |
36923331 |
T |
|
| Q |
412 |
cgatcttttacgtagtttttagcaggatatacccaagagttgcagacaaagtggataacat |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36923330 |
cgatcttttacgtagtttttagcaggatatacccaagagttgcagacaaagtggataacat |
36923270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 47129164 - 47129223
Alignment:
| Q |
133 |
gacctttatcaggatttcccaaatcattgtagcatgcataatcataaaccctatcccact |
192 |
Q |
| |
|
|||| ||||| ||| ||||||| ||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
47129164 |
gaccattatctggagttcccaagtcattgtagcatgcatagtcatacactctatcccact |
47129223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 190
Target Start/End: Original strand, 46711718 - 46711840
Alignment:
| Q |
68 |
agttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggacgagaatgttcaagacctttatcaggatttcccaaatcattgtagcat |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||| || || ||||||||||||||| |||||||||| ||| || |
|
|
| T |
46711718 |
agttcttcccctgcgagggtaaggatattcactggaccctccaagaactggacgaacatatttcggacctttatcaggatccgccaaatcattatagtat |
46711817 |
T |
|
| Q |
168 |
gcataatcataaaccctatccca |
190 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
46711818 |
gcataatcataaaccctgtccca |
46711840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 36744130 - 36744008
Alignment:
| Q |
41 |
ctaacctgatttggcaggttctctgccagttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggacgagaatgttcaagaccttta |
140 |
Q |
| |
|
|||||||| ||||| |||| ||||| ||||||||||| ||||| || ||| ||| || ||| ||||| ||||| ||||||| | | || ||| ||| |
|
|
| T |
36744130 |
ctaacctgttttggtcggttttctgcaggttcttcccctacgaggatagggaaatttagaagaacctccgagaatcggacgagcaaggtctcgactctta |
36744031 |
T |
|
| Q |
141 |
tcaggatttcccaaatcattgta |
163 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
36744030 |
tctggatttcccaaatcattgta |
36744008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University