View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19117_low_8 (Length: 422)
Name: NF19117_low_8
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 22569852 - 22570230
Alignment:
| Q |
1 |
ccacccaatgagtgttgacgtgtcttaattaatttaagtactgcataatgagggtctgaactctgaaagaataaatctgcttaattaatatgcctgatac |
100 |
Q |
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| T |
22569852 |
ccacccaatgagtgttgacgtgtcttaattaatttaagtactgcataatgagggtctg-------aaagaataaatctgcttaattaatatgcctgatac |
22569944 |
T |
|
| Q |
101 |
tgtttaatgcttcattggttttgttaggttcacttcggagttaccttcaaaaatagtacaatttcacataattgttctgttacattttgaggttttgata |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22569945 |
tgcttaatgcttcattggttttgttaggttcacttcggagttaccttcaaaaatagtacaatttcacataattgttctgttacattttgaggttttgata |
22570044 |
T |
|
| Q |
201 |
taaggctgtagtatttctattgaagcttgattttctccttttttaaaaatcatcggaaagttaccggaagagtc-------------tatggcaaactaa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22570045 |
taaggctgtagtatttctattgaagcttgattttctccttttttaaaaatcatcggaaagttaccggaagagtctaatctctcataatatggcaaactaa |
22570144 |
T |
|
| Q |
288 |
tgttaaaattttcgttgaga-gtgtctatgtttgatgtttggtggtgcctcaaataggatcatcttcggtggaagaaacttgtgat |
372 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22570145 |
tgttaaaattttcgttgagaggtgtctatgtttgatgtttggtggtgcctcaaataggatcatcttcggtggaagaaacttgtgat |
22570230 |
T |
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