View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19118_high_6 (Length: 255)
Name: NF19118_high_6
Description: NF19118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19118_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 16084188 - 16083941
Alignment:
| Q |
1 |
caatttcctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
16084188 |
caatttcctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggttgagtcacagtgtggtctcaaacctaatactt |
16084089 |
T |
|
| Q |
101 |
tctcaggcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatgcttcttcaaacccataattac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16084088 |
tctcaggcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatgcttctccaaacccataattac |
16083989 |
T |
|
| Q |
201 |
agacaaagaacttagaagttcataaccaactcgtttcatctcactcga |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16083988 |
agacaaagaacttagaagttcataaccaactcgtttcacttcactcga |
16083941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 22775699 - 22775930
Alignment:
| Q |
1 |
caatttcctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactt |
100 |
Q |
| |
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||||||||||| |||||||||||||| ||||| |||||||||||||||| |||||| ||||||||| | || || ||||||| |||||||| || |||| |
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| T |
22775699 |
caatttcctttatgtcgaatttctaatccaggcacatcatcatcttgcataagtaaagtaatggtgcttgagtcggagtgtggactcaaacccaacactt |
22775798 |
T |
|
| Q |
101 |
tctcaggcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatgcttcttcaaacccataattac |
200 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||| |||| || | ||| |||||||| || |
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| T |
22775799 |
gctcaggtgtgtcgcaaggagggtaatagttcacacgtaaaccctgaagtacttctttatgcagtccagcaagaacatgtttttccaaccccataataac |
22775898 |
T |
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| Q |
201 |
agacaaagaacttagaagttcataaccaactc |
232 |
Q |
| |
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||||||||||||||||||||| | |||||||| |
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| T |
22775899 |
agacaaagaacttagaagttcgtcaccaactc |
22775930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 22778854 - 22779087
Alignment:
| Q |
1 |
caatttcctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactt |
100 |
Q |
| |
|
||||||||||||| || |||||||| ||| | |||||||||||||| | |||||||||||||||||| | ||| ||||||| |||||||| ||||||| |
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|
| T |
22778854 |
caatttcctttgtttctgatttctaatccaagcacatcatcatcttgaataagtaaggtaatggtggttgtgtcagagtgtggactcaaacccaatactt |
22778953 |
T |
|
| Q |
101 |
tctcaggcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatgcttcttcaaacccataattac |
200 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||||||||||||| || ||||||||| |||||| | |||||||| |||| ||| ||||| || | |
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| T |
22778954 |
gctcagggttgttgcaaggagggtaatagttcacgcgtaaaccttgaattaattctttatgcagttcagcgagagcatgtttctccaaccccatgataat |
22779053 |
T |
|
| Q |
201 |
agacaaagaacttagaagttcataaccaactcgt |
234 |
Q |
| |
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||||| | ||||||||||||| | ||||||||| |
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| T |
22779054 |
agacagaaaacttagaagttcctcgccaactcgt |
22779087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 22766182 - 22766419
Alignment:
| Q |
1 |
caatttcctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||| ||| | |||||||||| | ||| |||||| |||||||| ||||||| |
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| T |
22766182 |
caatttcctttgtttcgaatttctaacccaggcacatcatcatcttgcataagaatggtaatggtgcctgtgtcagagtgtgagctcaaacccaatactt |
22766281 |
T |
|
| Q |
101 |
tctcaggcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatgcttcttcaaacccataattac |
200 |
Q |
| |
|
||||| || |||| | |||||||||||| |||||| ||| |||||||| ||||||||| | ||| ||||||||| |||| ||| |||||||| | |
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| T |
22766282 |
gatcaggtgtgttgcatgtagggtaatagtttacacgtgaacattgaagtaattctttatgcatcccaaaaagagcatgtttctccaaccccataataag |
22766381 |
T |
|
| Q |
201 |
agacaaagaacttagaagttcataaccaactcgtttca |
238 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |
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| T |
22766382 |
agacaaagaacttagaagttcctcaccaactcgtttca |
22766419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 22783301 - 22783545
Alignment:
| Q |
1 |
caatttcctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||| || |||||||||||| | ||| | || | |||| ||||||||||| |
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|
| T |
22783301 |
caatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgcgaactcatacctaatactt |
22783400 |
T |
|
| Q |
101 |
tctcaggcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatgcttcttcaaacccataattac |
200 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| |||||| | ||||||||| | | |||||||||||||||||| || |||||||| | |
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| T |
22783401 |
gctcaggtgtgttgcaaggagggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaagagcatgcttctctaaccccataataat |
22783500 |
T |
|
| Q |
201 |
agacaaagaacttagaagttcataaccaactcgtttcatctcact |
245 |
Q |
| |
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|||||||||||||| |||||| | |||||||||||||| ||||| |
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| T |
22783501 |
agacaaagaacttaaaagttcctcgccaactcgtttcatttcact |
22783545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 23278121 - 23277948
Alignment:
| Q |
1 |
caatttcctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactt |
100 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||| ||||||| || || |||| ||| | | |||| ||||||| |||| || | ||||| |
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| T |
23278121 |
caatttcctttgtatcgaacttctaacccagttacatcatcgtcttgcataactattgtaactgtgcttgcatcagagtgtggagtcaacccaattactt |
23278022 |
T |
|
| Q |
101 |
tctcaggcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaaga |
174 |
Q |
| |
|
||| || || | |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
23278021 |
gctctggtgtgttacaaggaggataatagttcacacgtaaaccttgaagtacttctttatgtagtccaagaaga |
23277948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 22770567 - 22770745
Alignment:
| Q |
1 |
caatttcctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactt |
100 |
Q |
| |
|
||||||| ||||| |||||||||| ||| | |||||||| ||||||| || || | |||||| | | |||| |||| || |||| ||||| ||||| |
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|
| T |
22770567 |
caatttcttttgtatcgaatttctgtccctgatacatcatcgtcttgcataactattgcaatggtccttggatcagagtgcggactcacacctagtactt |
22770666 |
T |
|
| Q |
101 |
tctcaggcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatg |
179 |
Q |
| |
|
|||| || || | ||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||| |||| |||| |
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|
| T |
22770667 |
tctcgggtgtgttacaaggagggtaatagttcacacggaaaccttgatgtacttctctatgtagatcaagaagaccatg |
22770745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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