View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19118_low_1 (Length: 639)
Name: NF19118_low_1
Description: NF19118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19118_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 16084192 - 16084482
Alignment:
| Q |
1 |
accggtaactcccatatcagatgctctagttgtcaatgttggagatgcaatagaggtacttgaataatttcttctttcttttcaaaactttaaagagaga |
100 |
Q |
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| T |
16084192 |
accggtaactcccatagcagatgctctagttgtcaatgttggagatgcaatagaggtaattgaataatttcttctcttttttcaaaactttaaagagaga |
16084291 |
T |
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| Q |
101 |
ctcatcgaccacagtcagaaagaactacataaatacaaatttcattgagagttttcaatgtaagttccaacttgatacgtcaaccca--tggcataggta |
198 |
Q |
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| T |
16084292 |
ctcatcgaccacagtcataaagaactacataaatacaaatttcattgagagttttcaatgtaagttccaacttgatacgtcaacccatgtggcataggta |
16084391 |
T |
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| Q |
199 |
ctttagattgaagatgtgttaggtgtctaacacatgttggtgtttgacactggttcaatcatctttcatgtttttcaatcattactagtgt |
289 |
Q |
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| T |
16084392 |
ctttagattgaagatgtgttaggtgtctaacacatgttggtgtctgacatcggttcaatcatctttcatgtttttcaatcattactagtgt |
16084482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 422 - 620
Target Start/End: Original strand, 16084861 - 16085058
Alignment:
| Q |
422 |
aacattcgtattgtagtcaaagaggtaggtacaatcgactgttataacaaaacatgtttagagattactataacaattaacaaagcttataaaaagaaag |
521 |
Q |
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| T |
16084861 |
aacattcgcattgtagtcaaagaggtaggtacaattgactgttataacaaaacatgtttagagattactataacaattaacaa-gcttataaaaagaaag |
16084959 |
T |
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| Q |
522 |
aaatactaacataaattcaggtaattatatatctacattttttcactttattccttttgtgatcagatatggagcaatggaaaatacaagagtgtagaa |
620 |
Q |
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| T |
16084960 |
aaatactaacataaattcagataattatatatctacattttttcactttattccttttgtgatcagatatggagtaatggaaaatacaagagtgtagaa |
16085058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 226 - 419
Target Start/End: Original strand, 16084483 - 16084679
Alignment:
| Q |
226 |
taacacatgttggtgtttgacactggttcaatcatctttcatgtttttcaatcattactagtgtctaagcgtaagtgtcagtgtcgtgtcccatgtcaan |
325 |
Q |
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| T |
16084483 |
taacacatgttggtgtctgacatcggttcaatcatctttcatgtttttcaatcattactagtgtctaagcgtaagtgtcagtgtcgggtcccatgtctag |
16084582 |
T |
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| Q |
326 |
nnnnnn---atcagcacttcataggtgtctgctccataattgaattgtttatgttgtgagcctaaagaaaacatgttgggtatggctcatagttact |
419 |
Q |
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| T |
16084583 |
tttttttttatcagcacttcataggtgtctgctccataattgaattgtttatgttgtgagcctaaagaaaacatgttgggtatggctcatagttact |
16084679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 22775688 - 22775623
Alignment:
| Q |
8 |
actcccatatcagatgctctagttgtcaatgttggagatgcaatagaggtacttgaataatttctt |
73 |
Q |
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| T |
22775688 |
actccaatatcagatgctctagttgtcaatgtcggagatgtaatagaggtaattgaataatttctt |
22775623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 22766165 - 22766120
Alignment:
| Q |
14 |
atatcagatgctctagttgtcaatgttggagatgcaatagaggtac |
59 |
Q |
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| T |
22766165 |
atatcagatgctcttgttgtcaatgttggagatgttatagaggtac |
22766120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 22778837 - 22778793
Alignment:
| Q |
14 |
atatcagatgctctagttgtcaatgttggagatgcaatagaggta |
58 |
Q |
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| T |
22778837 |
atatcagatgctctagttatcaatgttggagatgttatagaggta |
22778793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 22775226 - 22775185
Alignment:
| Q |
579 |
tgtgatcagatatggagcaatggaaaatacaagagtgtagaa |
620 |
Q |
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| T |
22775226 |
tgtgaacagatatggagtaatggaagatacaagagtgtagaa |
22775185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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