View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19118_low_3 (Length: 400)
Name: NF19118_low_3
Description: NF19118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19118_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 382
Target Start/End: Original strand, 34876471 - 34876834
Alignment:
| Q |
11 |
cacagaagaacccctcatagttgccatgattatgtcaaattctcctactgcataaatatgtcaccgtcgcaccaaatttatcaacacagttagaataata |
110 |
Q |
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| T |
34876471 |
cacagaagaacccctcatagttgccatgattatgtcaaattctccttctgcataaatatgtcaccgtcacaccaaaattatcaa-----------taata |
34876559 |
T |
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| Q |
111 |
acagtatatgtgacagaaggataactaatataagcagatgaatcgacaagagctgaatctctttggatcgtgtaacgaaaacttnnnnnnnnnnnn---t |
207 |
Q |
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| T |
34876560 |
acagtatatgtgacagaaggataactaatataagcagatgaatcgacaagagctgaatctctatggatcgtgtaacgaaaacttaaaaaaaaataaaaat |
34876659 |
T |
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| Q |
208 |
tagttagagattaaatttacagtaattgattactcaccagtgctcctggagagtgtacctgataacaatgatcagaagggtggtattttgtagtggaaga |
307 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34876660 |
tagttagagactaaagttacagtaattgattactcaccagtgctcctggagagtgtacctgctaacaatgatcagaagggtggtattttgtagtggaaga |
34876759 |
T |
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| Q |
308 |
agaagaagagtgtaacccaacatggcctactacattttgacacgtggaagaatgagtaatttcatgcgtacacat |
382 |
Q |
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| T |
34876760 |
agaagaagagtgtaacccaacatggcctactacattttgacacgtggaagaatgagtaatttcatgcgtacacat |
34876834 |
T |
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