View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19118_low_4 (Length: 360)

Name: NF19118_low_4
Description: NF19118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19118_low_4
NF19118_low_4
[»] chr2 (3 HSPs)
chr2 (18-358)||(3751393-3751743)
chr2 (296-341)||(44904532-44904577)
chr2 (290-338)||(42928934-42928982)
[»] chr4 (5 HSPs)
chr4 (293-353)||(20945863-20945923)
chr4 (293-341)||(28426836-28426884)
chr4 (293-338)||(23702399-23702444)
chr4 (293-341)||(2672972-2673020)
chr4 (293-341)||(11148352-11148400)
[»] chr3 (5 HSPs)
chr3 (289-339)||(55198328-55198378)
chr3 (293-341)||(3025825-3025873)
chr3 (293-341)||(5377809-5377857)
chr3 (293-341)||(25529926-25529974)
chr3 (293-341)||(27662666-27662714)
[»] chr8 (2 HSPs)
chr8 (288-341)||(7272897-7272950)
chr8 (293-341)||(7274660-7274708)
[»] chr1 (3 HSPs)
chr1 (293-338)||(9627593-9627638)
chr1 (293-341)||(11429228-11429276)
chr1 (293-341)||(43883814-43883862)
[»] chr7 (1 HSPs)
chr7 (293-341)||(38758326-38758374)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 3751743 - 3751393
Alignment:
Q  18 agatttaggtatagtgagctgtttgtaaatttctatttctgtatatagtatagtatatttcaagatcatgatagatacgggtgtgtgctacgtgtttatg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3751743 agatttaggtatagtgagctgtttgtaaatttctatttctgtata--gtatagtatatttcaagatcatgatagatacgggtgtgtgctacgtgtttatg 3751646  T
Q  118 catgtgccttgttggtttatatatccatcttcattacactacattgaaactcaataaataac----------taccaacacaagtgcatgagaaatgaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  3751645 catgtgccttgttggtttatatatccatcttcattacactacattgaaactcaataaataacatgatgtatataccaacacaagtgcatgagaaatgaat 3751546  T
Q  208 tctagtcaattatcagagttttatacattattctctctaaaatttataggaactttact-aaaaaatttccctattaaacaatagacttaaataagt-aa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || ||    
T  3751545 tctagtcaattatcagagttttatacattattctctctaaaatttataggaactttattaaaaaaatttccctattaaacaatagacttaaatacgtaaa 3751446  T
Q  306 aaggtctttgcaagttagcgcattttttgttttagtattggtatctttctctg 358  Q
    ||||||  || || |||||||||||||||||||||||||||||||||| ||||    
T  3751445 aaggtccatgtaaattagcgcattttttgttttagtattggtatctttttctg 3751393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 44904532 - 44904577
Alignment:
Q  296 aaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||||    
T  44904532 aaatatgtaaaaggtctttgtaagttagcgcatttttggttttagt 44904577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 42928934 - 42928982
Alignment:
Q  290 agacttaaataagtaaaaggtctttgcaagttagcgcattttttgtttt 338  Q
    ||||||||||| ||||||||||| || ||||| |||||||||| |||||    
T  42928934 agacttaaatatgtaaaaggtctctgtaagttcgcgcatttttggtttt 42928982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 20945863 - 20945923
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagtattggtatcttt 353  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||||||| || ||||||||    
T  20945863 cttaaataagaaaaaggtctttgtaagttcgcgcattttttgttttagtctttgtatcttt 20945923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 28426836 - 28426884
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    |||||||||||||||||||  || ||||| |||||||||||||||||||    
T  28426836 cttaaataagtaaaaggtccatgtaagttggcgcattttttgttttagt 28426884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 23702399 - 23702444
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgtttt 338  Q
    |||||||| |||||||||| ||| ||||| ||||||||||||||||    
T  23702399 cttaaatatgtaaaaggtccttgtaagttcgcgcattttttgtttt 23702444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 2673020 - 2672972
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    |||||||||||||||| ||| || ||||| |||||||||| ||||||||    
T  2673020 cttaaataagtaaaagatctatgtaagttggcgcatttttggttttagt 2672972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 11148352 - 11148400
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    |||||||||||||||||||  || |||||||||| ||||| ||||||||    
T  11148352 cttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagt 11148400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 55198378 - 55198328
Alignment:
Q  289 tagacttaaataagtaaaaggtctttgcaagttagcgcattttttgtttta 339  Q
    ||||||||||||||||||||||| ||| || || |||||||||||||||||    
T  55198378 tagacttaaataagtaaaaggtccttgtaaattggcgcattttttgtttta 55198328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 3025825 - 3025873
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    ||||||||||||||||||   || ||||| |||||||||||||||||||    
T  3025825 cttaaataagtaaaaggttcctgtaagttggcgcattttttgttttagt 3025873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 5377809 - 5377857
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    |||||||||||||||||||  || || || |||||||||||||||||||    
T  5377809 cttaaataagtaaaaggtccctgtaaattggcgcattttttgttttagt 5377857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 25529974 - 25529926
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    ||||||||||||||||||| ||| ||||| |||| ||||| ||||||||    
T  25529974 cttaaataagtaaaaggtccttgtaagttggcgcgtttttggttttagt 25529926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 27662714 - 27662666
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    |||||||||||||||||||   | |||||||||| ||||||||||||||    
T  27662714 cttaaataagtaaaaggtcccggtaagttagcgcgttttttgttttagt 27662666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 7272897 - 7272950
Alignment:
Q  288 atagacttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    |||| |||||||||||||||||||| || ||||| |||||||||| ||||||||    
T  7272897 ataggcttaaataagtaaaaggtctctgtaagttggcgcatttttggttttagt 7272950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 7274708 - 7274660
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    |||||||||| ||||||||  || ||||| |||||||||||||||||||    
T  7274708 cttaaataagaaaaaggtccctgtaagttcgcgcattttttgttttagt 7274660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 9627638 - 9627593
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgtttt 338  Q
    |||||||| ||||||||||| || ||||| ||||||||||||||||    
T  9627638 cttaaatatgtaaaaggtctctgtaagttcgcgcattttttgtttt 9627593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 11429228 - 11429276
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    |||||||||||||||||||| || || || |||| ||||||||||||||    
T  11429228 cttaaataagtaaaaggtctctgtaaattggcgcgttttttgttttagt 11429276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 43883862 - 43883814
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    |||||||||||||||||||  || ||||| | |||||||||||||||||    
T  43883862 cttaaataagtaaaaggtccatgtaagttggtgcattttttgttttagt 43883814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 38758374 - 38758326
Alignment:
Q  293 cttaaataagtaaaaggtctttgcaagttagcgcattttttgttttagt 341  Q
    |||||||||||||||||||  || |||||||||| ||||| ||||||||    
T  38758374 cttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagt 38758326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University