View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19118_low_6 (Length: 328)
Name: NF19118_low_6
Description: NF19118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19118_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 323
Target Start/End: Original strand, 42059848 - 42060161
Alignment:
| Q |
10 |
aggagcacagaggatgtttaccaaggatggaatttaccctggaatgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagct |
109 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42059848 |
aggaccacaaaggatgtttaccaaggatggaatttaccctggaatgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagct |
42059947 |
T |
|
| Q |
110 |
cgcaaatacccgaaccacaagtggattgaactcatcaacatgccacttatcattggaggtgccagtggtataccaccagctagatcaatcaattatattt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42059948 |
cgcaaatacccgaaccacaagtggattgaactcatcaacatgccacttatcattggaggtgccagtggtataccaccagctagatcaatcaattatattt |
42060047 |
T |
|
| Q |
210 |
catggggagtagttggaatcttcttcaatttctatgtttacaaaaatttcaaggcatggtgggctagacacacttacattctctcagctgctttgcatgc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42060048 |
catggggagtagttggaatcttcttcaatttctatgtttacaaaaatttcaaggcatggtgggctagacacacttacattctctcagctgctttggatgc |
42060147 |
T |
|
| Q |
310 |
tggtattgctttca |
323 |
Q |
| |
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|||||||||||||| |
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| T |
42060148 |
tggtattgctttca |
42060161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 42083735 - 42084038
Alignment:
| Q |
20 |
aggatgtttaccaaggatggaatttaccctggaatgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaatacc |
119 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
42083735 |
aggatgttcaccaaggatggaatataccctggaatgaattggtttttcctcatcggtctacttgcgcctgttccggtgtggtttctagctcgcaaatacc |
42083834 |
T |
|
| Q |
120 |
cgaaccacaagtggattgaactcatcaacatgccacttatcattggaggtgccagtggtataccaccagctagatcaatcaattatatttcatggggagt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42083835 |
cgaaccacaagtggattgaactcatcaacatgccacttataattggaggtgctagtggtataccaccagctaggtcaatcaattatatttcatggggagt |
42083934 |
T |
|
| Q |
220 |
agttggaatcttcttcaatttctatgtttacaaaaatttcaaggcatggtgggctagacacacttacattctctcagctgctttgcatgctggtattgct |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
42083935 |
tgttggaatcttcttcaatttctatgtttacaaaaatttcaaggcatggtgggctagacacacttacattctctcagctgctttggatgctggtgttgct |
42084034 |
T |
|
| Q |
320 |
ttca |
323 |
Q |
| |
|
|||| |
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|
| T |
42084035 |
ttca |
42084038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 42075155 - 42075458
Alignment:
| Q |
20 |
aggatgtttaccaaggatggaatttaccctggaatgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaatacc |
119 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42075155 |
aggatgttcaccaaggatggaatataccctggattgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaatacc |
42075254 |
T |
|
| Q |
120 |
cgaaccacaagtggattgaactcatcaacatgccacttatcattggaggtgccagtggtataccaccagctagatcaatcaattatatttcatggggagt |
219 |
Q |
| |
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| |||| ||||||||||||||| ||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
42075255 |
caaaccgaaagtggattgaactcgtcaacatgccaattatcattgcaggggccaaaggtataccaccagctagatcaatcagttacatttcatggggagt |
42075354 |
T |
|
| Q |
220 |
agttggaatcttcttcaatttctatgtttacaaaaatttcaaggcatggtgggctagacacacttacattctctcagctgctttgcatgctggtattgct |
319 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
42075355 |
tgttggaatcttcttcaatatctatgtttacaaaaaattcaaggtatggtgggctagacacacttacattctctcagctgctttggatgctggtgttgct |
42075454 |
T |
|
| Q |
320 |
ttca |
323 |
Q |
| |
|
|||| |
|
|
| T |
42075455 |
ttca |
42075458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 36523532 - 36523265
Alignment:
| Q |
18 |
agaggatgtttaccaaggatggaatttaccctggaatgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaata |
117 |
Q |
| |
|
|||| ||||||||||| || || |||| |||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||| ||||| |
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| T |
36523532 |
agagaatgtttaccaaagacggcgtttatcctgagatgaattggtttttccttattggtctacttgcacctgttccagtgtggcttctttctctcaaatt |
36523433 |
T |
|
| Q |
118 |
cccgaaccacaagtggattgaactcatcaacatgccacttatcattggaggtgccagtggtataccaccagctagatcaatcaattatatttcatgggga |
217 |
Q |
| |
|
| ||||| ||||||||| ||||||| ||||| || ||||| | |||||| ||| || ||||||| ||||| | ||||| ||| | |||||| |
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| T |
36523432 |
tcgtaaccaaaagtggattcaactcattaacattcctattatcgccgcaggtgcatctggcattccaccagtgagatctgtgaattacattacttgggga |
36523333 |
T |
|
| Q |
218 |
gtagttggaatcttcttcaatttctatgtttacaaaaatttcaaggcatggtgggctagacacactta |
285 |
Q |
| |
|
| |||||||| | ||||||||||||||||| | ||| ||||||||||||||||||||||| ||||| |
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| T |
36523332 |
attgttggaatggttttcaatttctatgtttatagaaagttcaaggcatggtgggctagacatactta |
36523265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 54 - 312
Target Start/End: Complemental strand, 36530329 - 36530071
Alignment:
| Q |
54 |
tgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaatacccgaaccacaagtggattgaactcatcaacatgcc |
153 |
Q |
| |
|
|||||||||||||||| ||||||||| | || || ||||| ||||||||||| ||| ||||| || ||||| ||||||||| || |||||||||| || |
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| T |
36530329 |
tgaattggtttttccttatcggtctaatcgcaccagttcccgtgtggcttctttctctcaaatttcccaaccaaaagtggattcaattcatcaacattcc |
36530230 |
T |
|
| Q |
154 |
acttatcattggaggtgccagtggtataccaccagctagatcaatcaattatatttcatggggagtagttggaatcttcttcaatttctatgtttacaaa |
253 |
Q |
| |
|
||||||||| |||||| || || ||||| | ||||| | ||||||||| | ||||| | |||||||| || ||||||||||||||||| | | |
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|
| T |
36530229 |
tattatcattgcaggtgcatctgacatcccacctgtgagatctgtgaattatattacttgggggattgttggaatatttttcaatttctatgtttataga |
36530130 |
T |
|
| Q |
254 |
aatttcaaggcatggtgggctagacacacttacattctctcagctgctttgcatgctgg |
312 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||||||| || ||||||| ||| ||||||| |
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|
| T |
36530129 |
aagttcaaagcatggtgggctagacatacttacatcctttcagctggtttagatgctgg |
36530071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 36535977 - 36535674
Alignment:
| Q |
18 |
agaggatgtttaccaaggatggaatttaccctggaatgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaata |
117 |
Q |
| |
|
|||| ||||||||||| || || |||| ||||| ||||||||||||||||| || || ||| |||| ||||| || ||||||||||| || ||||| |
|
|
| T |
36535977 |
agagaatgtttaccaatgacggcgtttatcctgggatgaattggtttttccttattggcctaattgcacctgtaccggtgtggcttctttctatcaaatt |
36535878 |
T |
|
| Q |
118 |
cccgaaccacaagtggattgaactcatcaacatgccacttatcattggaggtgccagtggtataccaccagctagatcaatcaattatatttcatgggga |
217 |
Q |
| |
|
|| ||||||||||||||| |||| |||||||| || ||||||||| |||||| | ||| || || ||||| | ||||||||| | |||||| |
|
|
| T |
36535877 |
tcctaaccacaagtggattaaacttatcaacattcctattatcattgtaggtgcatctactattcctcccaggagatctgtgaattatattacttgggga |
36535778 |
T |
|
| Q |
218 |
gtagttggaatcttcttcaatttctatgtttacaaaaatttcaaggcatggtgggctagacacacttacattctctcagctgctttgcatgctggtattg |
317 |
Q |
| |
|
| |||||||| || ||||||||||||||||| | ||| |||| | |||||||||||||| ||||| ||||||||||||| ||| ||||||| ||| |
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| T |
36535777 |
attgttggaatgtttttcaatttctatgtttatagaaagttcagagtttggtgggctagacatacttatattctctcagctggtttagatgctggagttg |
36535678 |
T |
|
| Q |
318 |
cttt |
321 |
Q |
| |
|
|||| |
|
|
| T |
36535677 |
cttt |
36535674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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