View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1911_high_1 (Length: 659)
Name: NF1911_high_1
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 301 - 641
Target Start/End: Original strand, 47455777 - 47456116
Alignment:
| Q |
301 |
gtgaaccaatttgcaaattgtagagacctatctctnnnnnnntaatttttaggaaccaatattttgtaaatcagcagcgagtttagaatttgcaaatttt |
400 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47455777 |
gtgaaccaatttgcaaattgtagggacctatctctaaaaaaataatttttaggaaccaatattttgtaaatcagcagcgagtttagaatttgcaaatttt |
47455876 |
T |
|
| Q |
401 |
tcgtaatgttttgcctctaatatatatcatcaactccatgctaaatttgaatgctcctgataaagggagtctaaagatatggtgttttggaagctcaaca |
500 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47455877 |
tcgtgatgttttgcctctaatatatatcatcaactccatgctaaatttgaatgctcctgataaagggagtctaaagatatggtgttttggaagctcaaca |
47455976 |
T |
|
| Q |
501 |
gtgatgatatttcaaacccaagtatttaaacacaagcaaggaaaataatagcaattactataagcaatatatatttcggtatcgtgtatcacaatggaag |
600 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47455977 |
gtgatggtatttcaaactcaagtattt-aacacaagcaaggaaaataatagcaattactataagcaatatatatttctgtatcgtgtatcacaatggaag |
47456075 |
T |
|
| Q |
601 |
aaaataagaagaggagaagctaccaagcttaggtaatgatc |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47456076 |
aaaataagaagaggagaagctaccaagcttaggtaatgatc |
47456116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 150 - 275
Target Start/End: Original strand, 47455638 - 47455776
Alignment:
| Q |
150 |
ttgtgattggttcgatcgcatcgcattttaaacaatagtcgcaattttggcagtatattttgtggatagacaaactgtc-------------acatagat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47455638 |
ttgtgattggttcgatcgcatcgcattttaaacaatagtcgcaattttggcagtatattttgtggatagacaaactgtctccctgttagtcaacatagat |
47455737 |
T |
|
| Q |
237 |
atttccaatataagagttttaaaagttttcaaaaagtta |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47455738 |
atttccaatataagagttttaaaagttttcaaaaagtta |
47455776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 47455491 - 47455540
Alignment:
| Q |
6 |
gtcgaagaatattatcagtttatttaaatttaaaattttccgctgccttg |
55 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47455491 |
gtcgaataatattatcagtttatttaaatttaaaatttttcgctgccttg |
47455540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 548 - 643
Target Start/End: Complemental strand, 15128364 - 15128269
Alignment:
| Q |
548 |
atagcaattactataagcaatatatatttcggtatcgtgtatcacaatggaagaaaataagaagaggagaagctaccaagcttaggtaatgatctg |
643 |
Q |
| |
|
||||||||| |||| |||||||| |||||| ||||| ||||||| || ||||||||||| ||||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
15128364 |
atagcaattgctatcagcaatatgtatttccgtatcatgtatcaaaagagaagaaaataacaagagcagaagctacaaagcttagggaatgatctg |
15128269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University