View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_high_12 (Length: 441)
Name: NF1911_high_12
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 6088563 - 6088156
Alignment:
| Q |
13 |
aatattctagtacacaatataagtggtcggcaatggttacacattcaattccaaaaactatagcactctcataatgttaggtctagttaggttctcaatt |
112 |
Q |
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| T |
6088563 |
aatattctagtacacaatataagtggtcggcaatggttacacattcaattccaaaaactatagcactctcataatgttaggtctagttaggttctcaatt |
6088464 |
T |
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| Q |
113 |
attgtataaaactgtatgtcagtaagttaaaacctctgagaattgcttgagaaaatgacaaactctctaaaacaggtaaaagacaacctaagaattaata |
212 |
Q |
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| T |
6088463 |
attgtataaaactgtatgtcagtaagttaaaacctctgagaattgcttgagaaaatgacaaactctctaaaacaggtaaaagacaacatacgaattaata |
6088364 |
T |
|
| Q |
213 |
aaggggccacaaatctcttttatgtgtggattagtagaatttggagccactaattatactcttcattagtacctataacttgtggaaatctatggtttag |
312 |
Q |
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| T |
6088363 |
aaggggccacaaatctcttttatgtgtggattagtagaatttggagccactaattatactcttcattagtacctataacttgtggaaatctatggtttag |
6088264 |
T |
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| Q |
313 |
ctagattttttagggctagttattgatttgcaatctcttgttttgctaaataagataacttagtggatatcattttgtcagctagctgataatggtgtat |
412 |
Q |
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| T |
6088263 |
ctagattttttagggctagttattgatttgcaatctcttgttttgctaaataagataacttagtggatatcattttgtcagctagctgataatggtgtat |
6088164 |
T |
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| Q |
413 |
accctcca |
420 |
Q |
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| T |
6088163 |
accctcca |
6088156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 99 - 410
Target Start/End: Original strand, 31715572 - 31715883
Alignment:
| Q |
99 |
ttaggttctcaattattgtataaaactgtatgtcagtaagttaaaacctctgagaattgcttgagaaaatgacaaactctctaaaacaggtaaaagacaa |
198 |
Q |
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| T |
31715572 |
ttaggttctcaattattgtataaaactgtatgtcagtaagataaaaaacctcagagttgcttgacaaaatgacaaactctctaaaacaggtaaaagacca |
31715671 |
T |
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| Q |
199 |
cctaagaattaataaaggggccacaaatctcttttatgtgtggattagtagaatttggagccactaattatactcttcattagtacctataacttgtgga |
298 |
Q |
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| T |
31715672 |
caaacaaattaataaagggaccacaaatct-ttttatgtgtggattagcagaatttggagccactaattatactcttcattagtaccaataacttgtgga |
31715770 |
T |
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| Q |
299 |
aatctatggtttagctagattttttagggctagttattgatttgcaatctcttgttttgctaaataagataacttagtggatatcattttgtcagctagc |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
31715771 |
aatctatggtttagctagattttttagggctagttattgatttgcaatctcttgttttgctaaataagataacttggtggatatcattttgtcagttagc |
31715870 |
T |
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| Q |
399 |
-tgataatggtgt |
410 |
Q |
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|||||||||||| |
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| T |
31715871 |
atgataatggtgt |
31715883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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