View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_high_18 (Length: 388)
Name: NF1911_high_18
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 42813119 - 42812748
Alignment:
| Q |
1 |
taaaagtggtcaaaaatgtccagccatcttactacagatcttagggaaaatatcatcactggactaaagtctcaaagaatcggccctagctaagttagat |
100 |
Q |
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| T |
42813119 |
taaaagtggtcaaaaatgtccagccatcttactacagatcttagggaaaatatcatcactggactaaagtctcaaagaatcggccctagctaagttagat |
42813020 |
T |
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| Q |
101 |
acaagctcactggccttgaaaaggttcttaatgtccaatgcaactgttattggttcactctagattcaactagtgatttgtgatcatataaatcaatcaa |
200 |
Q |
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| T |
42813019 |
acaagctcactggccttgaaaaggttattaatgtccaatgcaactgttattggttcactctagattcaactagtgacttgtgatcatataaatcaatcaa |
42812920 |
T |
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| Q |
201 |
acatggaaaccctgtttaatttaataagaaaatttataccaaaaacagaggcatcttgagaacgcagtctggaatctggatacatagtaccaaacatgat |
300 |
Q |
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| T |
42812919 |
acatggaaaccctgtttaatttaataagaaaatttataccaaaaacagaggcatcttgagaacgcagtctggaatctggatacatagtaccaaacatgat |
42812820 |
T |
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| Q |
301 |
tttttatcttttaatccacactcgagnnnnnnngaggttgactgaattctgttattgatgtatatgcaaaat |
372 |
Q |
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| T |
42812819 |
tttttatcttttaatccacactcgagaaaaaaagaggttggctgaattctgttattgatgtatatgcaaaat |
42812748 |
T |
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