View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_high_20 (Length: 379)
Name: NF1911_high_20
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 2917251 - 2917427
Alignment:
| Q |
15 |
acttcaaatgttcaattctgaagaaggtggatcacgtttgtttttgactgcagttgatgcttattctgttgtatttgttgatgctaatggaaatagtgct |
114 |
Q |
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| T |
2917251 |
acttcaaatgttcaattctgaagaaggtggatcacgtttgtttttgactgcagttgatgcttattctgttgtatttgttgatgctaatggaaatagtgct |
2917350 |
T |
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| Q |
115 |
ttgtctatttagtatgagttctaataaataattggagtacttgtaatgtattcctttcttaatgaataataactaca |
191 |
Q |
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| T |
2917351 |
ttgtctatttagtatgagttctaataaataattggagtacttgtaatgtattcctttcttaatgaataataactaca |
2917427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 2930839 - 2930942
Alignment:
| Q |
15 |
acttcaaatgttcaattctgaagaaggtggatcacgtttgtttttgactgcagttgatgcttattctgttgtatttgttgatgctaatggaaatagtgct |
114 |
Q |
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| T |
2930839 |
acttcaaatgttcaattctgaagaaggtggatcacgtttgtttttgactgcaattgatgtttattctgttctatttgttgaagctaatggaaatagtgct |
2930938 |
T |
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| Q |
115 |
ttgt |
118 |
Q |
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|||| |
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| T |
2930939 |
ttgt |
2930942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 2917497 - 2917567
Alignment:
| Q |
261 |
tgatgttgataaaaattggcagccatgttcagtttgtatagatcggttgcgtgataagatttacatctgtc |
331 |
Q |
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| T |
2917497 |
tgatgttgataaaaattggcagccatgttcagtttgtatggatcggttacgtgataagatttacatctgtc |
2917567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 24555243 - 24555314
Alignment:
| Q |
28 |
aattctgaagaaggtggatcacgtttgtttttgactgcagttgatgcttattctgttgtatttgttgatgct |
99 |
Q |
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| T |
24555243 |
aattctggtgaaggtggatcacgtttgattttgactgcaattaatgcttattctgttgtatttgttgatgct |
24555314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 2931073 - 2931139
Alignment:
| Q |
261 |
tgatgttgataaaaattggcagccatgttcagtttgtatagatcggttgcgtgataagatttacatct |
328 |
Q |
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| T |
2931073 |
tgatgttgataaaaattggcagccatgttcag-ttgtatggatcggttaagtgataagattttcatct |
2931139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 24566949 - 24567023
Alignment:
| Q |
25 |
ttcaattctgaagaaggtggatcacgtttgtttttgactgcagttgatgcttattctgttgtatttgttgatgct |
99 |
Q |
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| T |
24566949 |
ttcaattccgaagatggtggaccacgtttgatttttactgtgaatgatgcttattctgttgtttttgttgatgct |
24567023 |
T |
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