View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_high_34 (Length: 313)
Name: NF1911_high_34
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_high_34 |
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| [»] scaffold1515 (1 HSPs) |
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| [»] scaffold1889 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 14408437 - 14408737
Alignment:
| Q |
5 |
aaagatccaaagattgaattcnnnnnnncacataataaaagaatgaaactcgaaatacaaaccatcacgagcgttggagtagttaacatagccatatcca |
104 |
Q |
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| T |
14408437 |
aaagatccaaagattgaattaaaaaaaacacataataaaagaatgaaactcgaaatacaaaccatcacgagcgttggagtagttaacatagccataacca |
14408536 |
T |
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| Q |
105 |
agagatgactgcgtcatctgatctctgcaaaccctaacagaaatcacaggggcaatctggctgaacagatcatacagctgcgcatcatttacgttccctt |
204 |
Q |
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| T |
14408537 |
agagatgactgcgtcatctgatctctgcaaaccctaacagaaatcacaggggcaatctggctgaacagatcatacagctgcgcatcatttacgttccctt |
14408636 |
T |
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| Q |
205 |
gaagatcaccgacgtacaaagaagaattctcaaatcttccagcactggtcaaagctgctggaacaacgatcgttggagatgaaattattgctgcctttgc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| |||| |
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| T |
14408637 |
gaagatcaccgacgtacaaagaagaattctcaaatcttccagcactggtcaaagctgctggaacaacgatctttggtgatgaaactattgctgccattgc |
14408736 |
T |
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| Q |
305 |
t |
305 |
Q |
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| T |
14408737 |
t |
14408737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1515 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold1515
Description:
Target: scaffold1515; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 104 - 305
Target Start/End: Original strand, 1 - 202
Alignment:
| Q |
104 |
aagagatgactgcgtcatctgatctctgcaaaccctaacagaaatcacaggggcaatctggctgaacagatcatacagctgcgcatcatttacgttccct |
203 |
Q |
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| T |
1 |
aagagatgactgcgtcatctgatcccggcaaaccctagcagaaagcactggtgcaatctgactgaacagatcataaagctggccctcattgacgttcctt |
100 |
T |
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| Q |
204 |
tgaagatcaccgacgtacaaagaagaattctcaaatcttccagcactggtcaaagctgctggaacaacgatcgttggagatgaaattattgctgcctttg |
303 |
Q |
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| T |
101 |
tcgagatcaccaacgtataaggaagcggtctcaaatcttccagtaccggtcaaagctgctggaacaacgatctttggtgatgaaaccactgctgccattg |
200 |
T |
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| Q |
304 |
ct |
305 |
Q |
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|| |
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| T |
201 |
ct |
202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1889 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1889
Description:
Target: scaffold1889; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 238
Target Start/End: Complemental strand, 1045 - 845
Alignment:
| Q |
38 |
aataaaagaatgaaactcgaaatacaaaccatcacgagcgttggagtagttaacatagccatatccaagagatgactgcgtcatctgatctctgcaaacc |
137 |
Q |
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|||||||||| ||| || ||| || |||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| || |||||| |
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| T |
1045 |
aataaaagaaccaaaatcaaaacacgaaccatcacgagcgttggagaagttgacatagccataaccaagagatgactgcgtcatctgatccctacaaacc |
946 |
T |
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| Q |
138 |
ctaacagaaatcacaggggcaatctggctgaacagatcatacagctgcgcatcatttacgttcccttgaagatcaccgacgtacaaagaagaattctcaa |
237 |
Q |
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|| || ||||| || || ||||||| || | ||||| ||||| || ||||| || |||| || ||||||||| |||||||| |||| |||||||| |
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| T |
945 |
ctgacggaaataacgtggccaatctgatagagaggttcataaagctgggcctcattcaccttcctttcaagatcaccaacgtacaatgaagcattctcaa |
846 |
T |
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| Q |
238 |
a |
238 |
Q |
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| T |
845 |
a |
845 |
T |
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