View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_high_44 (Length: 258)
Name: NF1911_high_44
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 2125440 - 2125225
Alignment:
| Q |
28 |
ttttatgccaaacatctaatcatatctttgtatataaatatttagactaaaattttagtggttaggtatggttctaaattctaaactattatattgagac |
127 |
Q |
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| T |
2125440 |
ttttatgccaaacatctaatcatatctttttatataaatatttatactaaaattttagtggttaagtatggttctaaattctaaactattatattgagac |
2125341 |
T |
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| Q |
128 |
cacaatttagaaacatgaacatagtcttatgtgttattaaaatgttacatattaaagaca--taaatggaaattgacttacccttccatgatttgactat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2125340 |
cacaatttagaaacatgaacatagtcttatgtgttattaaaatgttacatattaaagacatgtaaatggaaattgacttacccttccatgatttgactat |
2125241 |
T |
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| Q |
226 |
tggagtaggtggtgga |
241 |
Q |
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|||||||||||||||| |
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| T |
2125240 |
tggagtaggtggtgga |
2125225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 2140334 - 2140306
Alignment:
| Q |
203 |
ttacccttccatgatttgactattggagt |
231 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2140334 |
ttacccttccatgatttgactattggagt |
2140306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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