View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_high_49 (Length: 250)

Name: NF1911_high_49
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_high_49
NF1911_high_49
[»] chr3 (3 HSPs)
chr3 (1-241)||(1605393-1605633)
chr3 (36-90)||(29233208-29233262)
chr3 (113-171)||(39304625-39304683)
[»] chr7 (8 HSPs)
chr7 (1-241)||(18780153-18780391)
chr7 (111-171)||(22189530-22189590)
chr7 (116-168)||(26703333-26703385)
chr7 (111-170)||(21556661-21556720)
chr7 (27-89)||(18777370-18777432)
chr7 (104-165)||(18779140-18779201)
chr7 (175-215)||(18775984-18776024)
chr7 (33-85)||(18777458-18777509)
[»] chr5 (4 HSPs)
chr5 (18-88)||(34980521-34980591)
chr5 (28-104)||(34980409-34980485)
chr5 (108-171)||(34980218-34980281)
chr5 (138-171)||(24426327-24426360)
[»] chr8 (2 HSPs)
chr8 (18-171)||(10150178-10150329)
chr8 (27-91)||(33831878-33831942)
[»] chr1 (2 HSPs)
chr1 (106-171)||(17645771-17645836)
chr1 (32-87)||(39252694-39252748)
[»] chr2 (4 HSPs)
chr2 (34-84)||(28781195-28781245)
chr2 (18-87)||(16605174-16605243)
chr2 (32-86)||(5867689-5867743)
chr2 (108-165)||(14437538-14437595)
[»] chr4 (2 HSPs)
chr4 (106-171)||(38347234-38347299)
chr4 (114-171)||(47509093-47509150)
[»] chr6 (2 HSPs)
chr6 (30-71)||(6859510-6859551)
chr6 (30-82)||(3439045-3439097)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 1605393 - 1605633
Alignment:
Q  1 aaaaacctcgtggcatgcaagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaaccttaactgtctt 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  1605393 aaaaacctcgtggcatgcaagattttctaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgcacttcaagaaacaaccttaattgtctt 1605492  T
Q  101 gcacactacctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacacaccatgttaagattttgaggatttggaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1605493 gcacactacctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacacaccatgttaaaattttgaggatttggaga 1605592  T
Q  201 aattgaatgaaaagagctttaaaagattgaatgagaataat 241  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  1605593 aattgaatgaaaagagctttaaaaggttgaatgagaataat 1605633  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 29233208 - 29233262
Alignment:
Q  36 aaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaacct 90  Q
    |||||||  |||||| |||||||||||| |||||||| |||||||||||||||||    
T  29233208 aaagtaaataagtgatggaaccaccttggttgtcttgcacttcaagaaacaacct 29233262  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 39304625 - 39304683
Alignment:
Q  113 ttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 171  Q
    ||||||||||||||||| ||  ||  ||||||||||| ||||||||||||||| |||||    
T  39304625 ttcctttacaattctaaacaatgttagacttcttcaatatgtatattttcaactaacac 39304683  T

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Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 18780153 - 18780391
Alignment:
Q  1 aaaaacctcgtggcatgcaagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaaccttaactgtctt 100  Q
    |||||||| ||||||||||||| || |||||||||||| ||||||||||| ||||||||| ||||||| ||| ||||||||||| |||||||  ||||||    
T  18780153 aaaaaccttgtggcatgcaagacttgccaagcaagaaactaaccaagtgatggaaccaccatgcttgtgttgaacttcaagaaataaccttacttgtctt 18780252  T
Q  101 gcacactacctcttcctttacaattctaagcatcgtgggac-ttcttcaacatgtatattttcaaccaacacaccatgttaagattttgaggatttggag 199  Q
    |  ||||||||||||||||||||||||||||||  |||||| || |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  18780253 g--cactacctcttcctttacaattctaagcattttgggacttttttcaacatgtatattttcaaccaagaca-catgttaagattttgaggatttggag 18780349  T
Q  200 aaattgaatgaaaagagctttaaaagattgaatgagaataat 241  Q
    ||||||||| | |||||| ||||||| |||||||||||||||    
T  18780350 aaattgaataacaagagcattaaaaggttgaatgagaataat 18780391  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 22189530 - 22189590
Alignment:
Q  111 tcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 171  Q
    |||||||||||||| |||||||  ||| ||||||||||| |||||||||||||||||||||    
T  22189530 tcttcctttacaatactaagcaatgtgtgacttcttcaatatgtatattttcaaccaacac 22189590  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 26703333 - 26703385
Alignment:
Q  116 ctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaa 168  Q
    |||||||||| ||||||  ||| ||||||||||||||||||||||||||||||    
T  26703333 ctttacaattataagcaatgtgagacttcttcaacatgtatattttcaaccaa 26703385  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 21556720 - 21556661
Alignment:
Q  111 tcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaaca 170  Q
    ||||||||||||||||||||||  ||| ||||| ||||||||||| ||| ||||||||||    
T  21556720 tcttcctttacaattctaagcaatgtgagactttttcaacatgtacattatcaaccaaca 21556661  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 18777370 - 18777432
Alignment:
Q  27 ccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaacc 89  Q
    |||| |||||||||||  || |||||||||||  |||||||||||| ||||||||||||||||    
T  18777370 ccaaacaagaaagtaaagaattgaaggaaccatattgcttgtcttgaacttcaagaaacaacc 18777432  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 18779140 - 18779201
Alignment:
Q  104 cactacctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaac 165  Q
    ||||||||||| ||||| |||||||||||  |||  ||| ||||||||||||||||||||||    
T  18779140 cactacctcttactttataattctaagcaatgtgacactccttcaacatgtatattttcaac 18779201  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 18775984 - 18776024
Alignment:
Q  175 atgttaagattttgaggatttggagaaattgaatgaaaaga 215  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  18775984 atgttaagattttgaggatttggagatattaaatgaaaaga 18776024  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 18777458 - 18777509
Alignment:
Q  33 aagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaac 85  Q
    |||||||||| ||||||||||||||||| | ||||||| | ||||||||||||    
T  18777458 aagaaagtaaacaagtgaaggaaccaccat-cttgtctcgcacttcaagaaac 18777509  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 34980591 - 34980521
Alignment:
Q  18 caagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaac 88  Q
    ||||| || |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||    
T  34980591 caagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttgcttgtcttggacttcaagaaacaac 34980521  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 34980409 - 34980485
Alignment:
Q  28 caagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaaccttaactgtcttgcac 104  Q
    |||| |||||||||| ||| |||||||| ||||||||||| |||| ||||||||||||||||||   ||||||||||    
T  34980409 caagtaagaaagtaaacaactgaaggaatcaccttgcttgccttgcacttcaagaaacaaccttgcttgtcttgcac 34980485  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 34980281 - 34980218
Alignment:
Q  108 acctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 171  Q
    ||||||||||||| |||||||||||  ||  |||||||| ||||||||||||||||||||||||    
T  34980281 acctcttcctttataattctaagcaatgtaagacttctttaacatgtatattttcaaccaacac 34980218  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 24426360 - 24426327
Alignment:
Q  138 ggacttcttcaacatgtatattttcaaccaacac 171  Q
    |||||||||||||||||| |||||||||||||||    
T  24426360 ggacttcttcaacatgtacattttcaaccaacac 24426327  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 10150329 - 10150178
Alignment:
Q  18 caagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaaccttaactgtcttgcacactacctcttcct 117  Q
    ||||| || |||| ||| ||||||| ||| |||| |||||   |||||||||||| ||||||||| ||||| ||   |||||||||   ||||| ||||     
T  10150329 caagacttgccaaacaaaaaagtaaacaaatgaatgaaccgttttgcttgtcttgcacttcaagatacaacattgcttgtcttgcat--taccttttcca 10150232  T
Q  118 ttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 171  Q
    |||||||| |||| |  ||| |||||||||||||||||||||||||||||||||    
T  10150231 ttacaattttaagtaatgtgagacttcttcaacatgtatattttcaaccaacac 10150178  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 33831942 - 33831878
Alignment:
Q  27 ccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaacctt 91  Q
    |||| ||||||||||| ||||||||| ||| ||||||||||| ||| ||||||||||| ||||||    
T  33831942 ccaatcaagaaagtaaacaagtgaagcaacaaccttgcttgtgttgcacttcaagaaataacctt 33831878  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 17645771 - 17645836
Alignment:
Q  106 ctacctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 171  Q
    ||||| |||||||||||||||||||||  ||| ||||||||||||||| |||| ||||||||||||    
T  17645771 ctaccccttcctttacaattctaagcaatgtgagacttcttcaacatgcatatattcaaccaacac 17645836  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 39252694 - 39252748
Alignment:
Q  32 caagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaa 87  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  39252694 caagaaagtaaacaagtgaaggaaccacc-tgcttgtcttgaacttcaataaacaa 39252748  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 28781195 - 28781245
Alignment:
Q  34 agaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaa 84  Q
    ||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  28781195 agaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 28781245  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 16605243 - 16605174
Alignment:
Q  18 caagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaa 87  Q
    ||||| ||||||||||||||| |||  ||||||||||||| ||||| ||| |||| |||| |||||||||    
T  16605243 caagactttccaagcaagaaattaaaaaagtgaaggaacctccttgtttgccttgcactttaagaaacaa 16605174  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 5867743 - 5867689
Alignment:
Q  32 caagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaaca 86  Q
    ||||||||| | || ||||||||||| ||||  ||||||||||||||||||||||    
T  5867743 caagaaagtgatcaggtgaaggaacctccttatttgtcttgtacttcaagaaaca 5867689  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 14437538 - 14437595
Alignment:
Q  108 acctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaac 165  Q
    |||||||||||||||||| ||||||  ||| |||||||| ||||||||  ||||||||    
T  14437538 acctcttcctttacaattttaagcaatgtgagacttcttaaacatgtacgttttcaac 14437595  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 38347299 - 38347234
Alignment:
Q  106 ctacctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 171  Q
    ||||||||| ||||||||||||||||  ||||| ||||||||||| | |||||||||||| |||||    
T  38347299 ctacctctttctttacaattctaagcgacgtggaacttcttcaacttatatattttcaactaacac 38347234  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 47509093 - 47509150
Alignment:
Q  114 tcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 171  Q
    |||||||||||| |||| |  |||  |||| |||||||||||||||||||||||||||    
T  47509093 tcctttacaattttaagtaatgtgcaactttttcaacatgtatattttcaaccaacac 47509150  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 6859510 - 6859551
Alignment:
Q  30 agcaagaaagtaaccaagtgaaggaaccaccttgcttgtctt 71  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  6859510 agcaagaaagtaaccaagtgaagcaactaccttgcttgtctt 6859551  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 3439097 - 3439045
Alignment:
Q  30 agcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaaga 82  Q
    ||||||||| ||| ||||||||| ||||||||||||| ||||| |||||||||    
T  3439097 agcaagaaaataaacaagtgaagcaaccaccttgcttatcttgcacttcaaga 3439045  T

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