View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1911_high_5 (Length: 586)
Name: NF1911_high_5
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Complemental strand, 12021621 - 12021242
Alignment:
| Q |
13 |
atactattagttgtttatattcgaaaatttagcggagattcctaatctagcacctacctgatatcttccataaaaagttgtttgggattttctatcaatc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12021621 |
atactattagttgtttatattcgaaaatttagctgagattcctaatccagcacctacctgatatcttccataaaaagttgtttgggattttctatcaatc |
12021522 |
T |
|
| Q |
113 |
cagatattgacacactgtatctgctctgccaatcatgtcataagaaaagaagttaaaattcgtcgacagtgaacaccagtgaccaaagaagtataatttc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12021521 |
cagatattgacacactgtatctgctctgccaaacatgtcataagaaaagaagttaaaattcgtcgacagtgaacaccagtgaccaaagaagtataatttc |
12021422 |
T |
|
| Q |
213 |
acataatcaaca---tacttttcaatgtcatcaactatcggtatggggccatgatttctcttgtagaataaatctgcaggagtcaaatatgccgaaaaca |
309 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12021421 |
acataatcaacatattactttccaatgtcatcaactatcggtatggggccatgatttctcttgtagaataaatctgcaggagtcaaatatgccgaaaaca |
12021322 |
T |
|
| Q |
310 |
aggcagattgtggtggctcggcattgaaaggttcctggggagaaacagtaaattgcatttgagaaacacatatctgaaaa |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12021321 |
aggcagattgtggtggctcggcattgaaaggttcctggggagaaacagtaaattgcatttgagaaacacatatctgaaaa |
12021242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 424 - 572
Target Start/End: Complemental strand, 12021237 - 12021089
Alignment:
| Q |
424 |
tatatatatcacagggtcaattcaagaaccattggaccatatacaatttgaattttaatatgatacagtgaacacatattttacataaatatcaagttat |
523 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12021237 |
tatatttatcacagggtcaattcaagaaccattggaccatatacaatttgaattttaatatgatacagtgaacacatattttacataaatatcaagttat |
12021138 |
T |
|
| Q |
524 |
atcgaattatttagtaagtttcacaaaattttcgaagtcatgaactatt |
572 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12021137 |
atcgaattatttagtaagtttcacaaaactttcgaagtcatgaactatt |
12021089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University