View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1911_high_6 (Length: 566)
Name: NF1911_high_6
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_high_6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 40386333 - 40386876
Alignment:
| Q |
18 |
aaaaggtcagagatgttgtgtttgagtggctnnnnnnnncagatatactcatacaagaaatggagaatcttacaatacaatcaaaaccaccatcatggat |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
40386333 |
aaaaggttagagatgttgtgtttgagtggctaaaagaagcagaaatagtcatgcaaaaaatggagaatcttaaattacaatcaaaaccaccatcatggat |
40386432 |
T |
|
| Q |
118 |
tgaatttaaaatattgcaagaaaaaattaaagaactaaataagaaatgtaattttgattcattttcaactacaattccaagtttaaagcacttctctcta |
217 |
Q |
| |
|
||||||||| | |||||| |||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| || |
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|
| T |
40386433 |
tgaatttaataaattgcaggaaaaaattacagcactaaataagaaatgtaattttgagccattttcaactacaattccaagtttagaacacttctcttta |
40386532 |
T |
|
| Q |
218 |
ggaagtaatttcgagtgtttcaagtcaacggagaaggcttctgatgagcttttggaggcactgcaagatgataattgttgtataattggattatacggta |
317 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||| |
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|
| T |
40386533 |
ggaaataatttcgagtgtttcaagtcgacggagaaggcttcagatgaacttttggaggcactgcaagatgataattgttgtatgataggattgtacggta |
40386632 |
T |
|
| Q |
318 |
ggcgtgactgtggtaaaactacattggtgaaagtaatgggtcagaaagtacaatatttgaataatttttatgagatattatttgtcaatgtgaccaaaaa |
417 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||| |
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|
| T |
40386633 |
ggcgtgactctggtaaaactacgttggtgaaagtaatggaacagaaagtccaatatttgaatatttttgatgagattttatttgtcaatgtgaccaaaaa |
40386732 |
T |
|
| Q |
418 |
cccaaatatcacatcaatgcaagatgaaattgctgactccttgaatataagatttgatagaaacagtgaagctggaagagccagaagaatattatccaca |
517 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
40386733 |
cccaaatatcacagcaatgcaagatgaaattgctgactccttgaatataagatttgatagaaacagtgaagctggaagagcaagaagaatattatccaca |
40386832 |
T |
|
| Q |
518 |
atagaaaatatggattgtccaatacttgtgatctttgatgatgt |
561 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
40386833 |
atagaagatatggatcgtccaatacttgttatctttgatgatgt |
40386876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 40333055 - 40333598
Alignment:
| Q |
18 |
aaaaggtcagagatgttgtgtttgagtggctnnnnnnnncagatatactcatacaagaaatggagaatcttacaatacaatcaaaaccaccatcatggat |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
40333055 |
aaaaggttagagatgttgtgtttgagtggctaaaagaagcagacataatcatgcaaaaaatggagaatcttaaattacaatcaaaaccaccatcatggat |
40333154 |
T |
|
| Q |
118 |
tgaatttaaaatattgcaagaaaaaattaaagaactaaataagaaatgtaattttgattcattttcaactacaattccaagtttaaagcacttctctcta |
217 |
Q |
| |
|
||||||||| | ||||| |||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| || |
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|
| T |
40333155 |
tgaatttaataagttgcaggaaaaaattacagcactaaataagaaatgtaattttgatccattttcaactacaattccaagtttagaacacttctcttta |
40333254 |
T |
|
| Q |
218 |
ggaagtaatttcgagtgtttcaagtcaacggagaaggcttctgatgagcttttggaggcactgcaagatgataattgttgtataattggattatacggta |
317 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||| |
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|
| T |
40333255 |
ggaaataatttcgagtgtttcaagtcgacggagaaggcttcagatgaacttttggaggcactgcaagatgataattgttgtatgataggattgtacggta |
40333354 |
T |
|
| Q |
318 |
ggcgtgactgtggtaaaactacattggtgaaagtaatgggtcagaaagtacaatatttgaataatttttatgagatattatttgtcaatgtgaccaaaaa |
417 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||| |
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|
| T |
40333355 |
ggcgtgactctggtaaaactacgttggtgaaagtaatggaacagaaagtccaatatttgaatatttttgatgagattttatttgtcaatgtgaccaaaaa |
40333454 |
T |
|
| Q |
418 |
cccaaatatcacatcaatgcaagatgaaattgctgactccttgaatataagatttgatagaaacagtgaagctggaagagccagaagaatattatccaca |
517 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
40333455 |
cccaaatatcacagcaatgcaagatgaaattgctgacttcttgaatataagattagatagaaacagtgaaactggaagagcaagaaaaatattatccaca |
40333554 |
T |
|
| Q |
518 |
atagaaaatatggattgtccaatacttgtgatctttgatgatgt |
561 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40333555 |
atagaagatatggatcgtccaatacttgtgatctttgatgatgt |
40333598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 40376088 - 40376631
Alignment:
| Q |
18 |
aaaaggtcagagatgttgtgtttgagtggctnnnnnnnncagatatactcatacaagaaatggagaatcttacaatacaatcaaaaccaccatcatggat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
40376088 |
aaaaggtcagagatgttgtgtttgagtggctaaaaaaaacagacataatcatacaagaagtggagaatcttgcagtacaatcaaaaccaccatcatggat |
40376187 |
T |
|
| Q |
118 |
tgaatttaaaatattgcaagaaaaaattaaagaactaaataagaaatgtaattttgattcattttcaactacaattccaagtttaaagcacttctctcta |
217 |
Q |
| |
|
||||||||| | ||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||| || ||||||||||||| | ||||||||| || |
|
|
| T |
40376188 |
tgaatttaataatttgcaggaaaacattaaagcactaaataagaaatgtaattttgatccattttcaattataattccaagtttagaacacttctcttta |
40376287 |
T |
|
| Q |
218 |
ggaagtaatttcgagtgtttcaagtcaacggagaaggcttctgatgagcttttggaggcactgcaagatgataattgttgtataattggattatacggta |
317 |
Q |
| |
|
|||| |||||| |||||||||||||| || ||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
40376288 |
ggaaataattttgagtgtttcaagtcgacagagaaggcttcagatgaacttttggaagcactgcaagatgataattgtcgtataataggattgtacggta |
40376387 |
T |
|
| Q |
318 |
ggcgtgactgtggtaaaactacattggtgaaagtaatgggtcagaaagtacaatatttgaataatttttatgagatattatttgtcaatgtgaccaaaaa |
417 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| ||||||| | ||| |||| |||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
40376388 |
ggcgtgactctggtaaaactacattggtgagagtaatgggtgagaaagtcatgtttttaaatatttttgatgagattttatttgtcaatgtgaccaaaaa |
40376487 |
T |
|
| Q |
418 |
cccaaatatcacatcaatgcaagatgaaattgctgactccttgaatataagatttgatagaaacagtgaagctggaagagccagaagaatattatccaca |
517 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
40376488 |
cccaaatatcacagcaatgcaagatgaaattgctgactccttgaatataagatttgatagaaacagtgaagctgaaagagcaagaaaaatattatccaca |
40376587 |
T |
|
| Q |
518 |
atagaaaatatggattgtccaatacttgtgatctttgatgatgt |
561 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
40376588 |
atagaaaatatggatcatcctatacttgtgatctttgatgatgt |
40376631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 328 - 561
Target Start/End: Original strand, 40277253 - 40277477
Alignment:
| Q |
328 |
tggtaaaactacattggtgaaagtaatgggtcagaaagtacaatatttgaataatttttatgagatattatttgtcaatgtgaccaaaaacccaaatatc |
427 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||||| | ||||| |||| |||| |||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
40277253 |
tggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaaacccaaatatc |
40277352 |
T |
|
| Q |
428 |
acatcaatgcaagatgaaattgctgactccttgaatataagatttgatagaaacagtgaagctggaagagccagaagaatattatccacaatagaaaata |
527 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||| |||||| | |||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
40277353 |
acagcaatgcaagatgaaattgctgactccttgaatattagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaata |
40277443 |
T |
|
| Q |
528 |
tggattgtccaatacttgtgatctttgatgatgt |
561 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
40277444 |
tggatcgtccaatacttgtgatctttgatgatgt |
40277477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 40283216 - 40283324
Alignment:
| Q |
18 |
aaaaggtcagagatgttgtgtttgagtggctnnnnnnnncagatatactcatacaagaaatggagaatcttacaatacaatcaaaaccaccatcatggat |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40283216 |
aaaaggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaa |
40283315 |
T |
|
| Q |
118 |
tgaatttaa |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
40283316 |
tgaatttaa |
40283324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 561
Target Start/End: Complemental strand, 40598490 - 40598102
Alignment:
| Q |
170 |
tttgattcattttcaactacaattccaagtttaaagcacttctctctaggaagtaatttcgagtgtttcaagtcaacggagaaggcttctgatgagcttt |
269 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| ||||||||||| ||||| || ||| |||||| ||||| | || ||| |||| ||| | ||| |
|
|
| T |
40598490 |
tttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatatttt---gtgttttaagtctagagataagacttcagatcaaattt |
40598394 |
T |
|
| Q |
270 |
tggaggcactgcaagatgataattgttgtataattggattatacggtaggcgtgactgtggtaaaactacattggtgaaagtaatgggtcagaaagtaca |
369 |
Q |
| |
|
| |||||||||| |||||||||||| | ||| |||||||| || ||||| | || |||||| || | |||| |||| ||||||| ||||||| | |
|
|
| T |
40598393 |
tagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaatgggtgagaaagttaa |
40598294 |
T |
|
| Q |
370 |
atatttgaataatttttatgagatattatttgtcaatgtgaccaaaaacccaaatatcacatcaatgcaagatgaaattgctgactccttgaatataaga |
469 |
Q |
| |
|
|| | || | |||| ||||| | ||||||| || ||||| |||||| ||||||| | | |||||||| ||||||||||||| || | || | | |
|
|
| T |
40598293 |
gcatctaaagatttttcatgaggttttatttgccacggtgacgcaaaacctgaatatcagaactatgcaagaagaaattgctgacttgttagacatgaca |
40598194 |
T |
|
| Q |
470 |
tttgatagaaacagtgaagctggaagagccagaagaatattatccacaatagaaaatatggattgtccaatacttgtgatctttgatgatgt |
561 |
Q |
| |
|
|| |||| ||| |||||| ||| |||||| ||||||||||| || | |||||||| |||| | ||||||| || ||||| || |||||||| |
|
|
| T |
40598193 |
ttcgataaaaaaagtgaaactgtaagagcaagaagaatattctcaagaatagaaagtatgagtcgtccaattctagtgattttcgatgatgt |
40598102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 40257726 - 40257680
Alignment:
| Q |
266 |
cttttggaggcactgcaagatgataattgttgtataattggattata |
312 |
Q |
| |
|
|||||||||||||||||||| | |||||| | ||||||||||||||| |
|
|
| T |
40257726 |
cttttggaggcactgcaagacggtaattgctatataattggattata |
40257680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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