View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_high_61 (Length: 238)
Name: NF1911_high_61
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_high_61 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 22796083 - 22796169
Alignment:
| Q |
152 |
aagttgtatcttggtttcttgttgtagttgctgcatatgaagctcaggcaggacttcatttagagttggaacaggttgatatctgtt |
238 |
Q |
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| T |
22796083 |
aagttgtatcttggtttcttgttgtagttgctgcatatgaagctcaggcaggacttcatttagagttggaacaggttgatatctgtt |
22796169 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 22795963 - 22796018
Alignment:
| Q |
18 |
caatggagttcaagaattgagtaattcttacttgggaatcagaggtaaattctttt |
73 |
Q |
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| T |
22795963 |
caatggtgttcaagaattgagtaattcttacttgggaatcagaggtaaattctttt |
22796018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 22796013 - 22796041
Alignment:
| Q |
80 |
tcttttgttgtttactgcattcgctagag |
108 |
Q |
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| T |
22796013 |
tcttttgttgtttactgcattcgctagag |
22796041 |
T |
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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 15870895 - 15870819
Alignment:
| Q |
160 |
tcttggtttcttgttgtagttgctgcatatgaagctcaggcaggacttcatttagagttggaacaggttgatatctg |
236 |
Q |
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| T |
15870895 |
tcttggtttcttgttgtagttgctgcatatgaagctcaggctggacttcatctagagttggaacaggttgatatctg |
15870819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 15871019 - 15870934
Alignment:
| Q |
18 |
caatggagttcaagaattgagtaattcttacttgggaatcagaggtaaattctttttgaacatcttttgttgtttactgcattcgctagag |
108 |
Q |
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| T |
15871019 |
caatggtgttcaagaattgagtaattctt----gggaatcagaggtaaatcctttt-gaacctcttttgttgtttactgcatttgctagag |
15870934 |
T |
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