View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_high_68 (Length: 236)
Name: NF1911_high_68
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 22883119 - 22882897
Alignment:
| Q |
1 |
ttggttatcggttgaaattattttgaacccaaattatcggtagatagaattatctctgtacaaaataggtttggacttgtacatatcttttacaacgtaa |
100 |
Q |
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| T |
22883119 |
ttggttatcggttgaaattattttgaacccaaattatcggtagatagaattatctctgtacaaaataggtttggacttgtacatatcttttacaacgtaa |
22883020 |
T |
|
| Q |
101 |
attccattgtatacgatttccacttcccatatcatcaattccctaaccttatgtaaagtaatgatgattcttgtatgaatccatcaatcaatctacccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22883019 |
attccattgtatacgatttccacttcccatatcatcaattccctaatcttatgtaaagtaatgatgattcttgtatgaatccatcaatcaatcaacccct |
22882920 |
T |
|
| Q |
201 |
tttcacaaaaggatctttattct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
22882919 |
tttcacaaaaggatctttattct |
22882897 |
T |
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