View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_1 (Length: 1704)

Name: NF1911_low_1
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_1
NF1911_low_1
[»] chr2 (3 HSPs)
chr2 (23-1690)||(9704247-9705916)
chr2 (935-965)||(10030158-10030188)
chr2 (935-965)||(10052071-10052101)
[»] chr5 (5 HSPs)
chr5 (894-999)||(38346874-38346979)
chr5 (939-997)||(5987351-5987409)
chr5 (939-1012)||(9634870-9634943)
chr5 (937-976)||(34689821-34689860)
chr5 (946-992)||(6586591-6586637)
[»] chr3 (5 HSPs)
chr3 (899-963)||(21754255-21754319)
chr3 (916-1003)||(38884850-38884937)
chr3 (899-966)||(54842173-54842240)
chr3 (889-1011)||(48605199-48605321)
chr3 (907-980)||(3133497-3133570)
[»] chr8 (4 HSPs)
chr8 (939-1012)||(10354744-10354817)
chr8 (939-979)||(42822651-42822691)
chr8 (890-979)||(9112426-9112515)
chr8 (910-979)||(12138199-12138268)
[»] chr4 (2 HSPs)
chr4 (902-979)||(18968295-18968370)
chr4 (938-1012)||(30617191-30617265)
[»] chr1 (4 HSPs)
chr1 (915-992)||(46937603-46937680)
chr1 (900-943)||(15955911-15955954)
chr1 (919-998)||(30882491-30882570)
chr1 (893-935)||(52695369-52695411)
[»] chr7 (4 HSPs)
chr7 (939-979)||(21173946-21173986)
chr7 (899-985)||(5336521-5336607)
chr7 (899-979)||(38622845-38622923)
chr7 (934-979)||(42114917-42114962)
[»] chr6 (1 HSPs)
chr6 (899-1012)||(10156605-10156718)


Alignment Details
Target: chr2 (Bit Score: 1564; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 1564; E-Value: 0
Query Start/End: Original strand, 23 - 1690
Target Start/End: Original strand, 9704247 - 9705916
Alignment:
Q  23 ttcatgtcaccaaggacaatcatccaaaaatcaaaggagatttacagatttacttagccagaaatcgaagctgatgtgtttagaagtagatcacatgtgt 122  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9704247 ttcatgtcaccaaggacgatcatccaaaaatcaaaggagatttacagatttacttagccagaaatcgaagctgatgtgtttagaagtagatcacatgtgt 9704346  T
Q  123 tggaaacgaagttcttgcaagaagaaaagagaaatttggccaaagagtatgatataaagaagaaaataagggaaagacaccccgaatagaaaactgagag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9704347 tggaaacgaagttcttgcaagaagaaaagagaaatttggccaaagagtatgatataaagaagaaaataagggaaagacaccccgaatagaaaactgagag 9704446  T
Q  223 gggggagtatattagaccaaaaacaagcttcacattaaaaaggatttgatgccttgaagcaaggcacaagtgaaatcaacacaaagtgtctaagataaca 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9704447 gggggagtatattagaccaaaaacaagcttcacattaaaaaggatttgatgccttgaagcaaggcacaagtgaaatcaacacaaagtgtctaagataaca 9704546  T
Q  323 aggttcttgaactccctcattgtgctgtaaaaccaatactcctaaaaattatttagctactgaaagcgtcatccttttcttaactttgaaaaacattatc 422  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9704547 aggttcttgaactccctcattgcactgtaaaaccaatactcctaaaaattatttagctactgaaagcgtcatccttttcttaactttgaaaaacattatc 9704646  T
Q  423 agatcactatgcctcttttgatcacatgaaacacaataaatatgtcaacaaaatagtacctgcaagtcaagaatgttgtaagtattggcagcatcatctc 522  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9704647 agatcactatgcctcttttgatcacatgaaacacactaaatatgtcaacaaaatagtacctgcaagtcaagaatgttgtaagtattggcagcatcatctc 9704746  T
Q  523 gagcccaaggcaagtcaggtgcgtacctccactgtccatccacgataaatctaaactgataaacaccagatggcagcaccttcattatagtgaagtcctt 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9704747 gagcccaaggcaagtcaggtgcgtacctccactgtccatccacgataaatctaaactgataaacaccagatggcagcaccttcattatagtgaagtcctt 9704846  T
Q  623 tcctgatctctgcaatggcatcctgatggacaaggaatatcagaatctaagcaacaactatagcgatctttgaagacaaataaagaagatattaacaacg 722  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9704847 tcctgatctctgcaatggcatcctgatggacaaggaatatcagaatctaagcaacaactatagcgatctttgaagacaaataaagaagatattaacaacg 9704946  T
Q  723 c-tttggcttgnnnnnnnc-tttccacttgaaacatttttacttataattacaacaatcgcacattttcagtttgctttttgtttttacaatccacaaaa 820  Q
    | |||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9704947 catttggcttgttttttttatttccacttgaaacatttttacttataattacaacaatcgcacattttcagtttgctttttgtttttacaatccacaaaa 9705046  T
Q  821 gtagtgaaaacaacattagtaatagcagctatggcggcagaatagcgctatagcacagcaaaatacggacagatcaccattgttctgtgatacactattt 920  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9705047 gtagtgaaaacaacattagtaatagcagctatggcggcagaatagcgctatagcatagcaaaatacggacagatcaccattgttctgtgatacactattt 9705146  T
Q  921 aggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaacagaccgcaattttctgcgatccgcaaatgacaactctgcatt 1020  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9705147 aggacaaaatgccgtcaaatagcagcgctatagcactattgcatagtgaaatttgaacagaccgcaattttctgcgatccgcaaatgaaaactctgcatt 9705246  T
Q  1021 ttttgaattaccagtggcagtgacaacatatcagtagcaaattaacttgattagcactaaattttacgaacctcgttttccaattatcccatgatccctc 1120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9705247 ttttgaattaccagtggcagtgacaacatatcagtagcaaattaacttgattagcactaaattttacgaacctcgttttccaattatcccatgatccctc 9705346  T
Q  1121 cacagcaacttctttaccatcataactccatgtaatcatcgtcggaattccaatttcactgaacatatcctcataccctgaattagtttgcatcaaggaa 1220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9705347 cacagcaacttctttaccatcataactccatgtaatcatcgtcggaattccaatttcactgaacatatcctcataccctgaattagtttgcatcaaggaa 9705446  T
Q  1221 gggcttggaacttgcatctcatcaggtctttgtagtggaaccaccggagcctaaaaacagtgaaaatggaatgattgacaactaatgataaataagaatc 1320  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9705447 gggctgggaacttgcatctcatcaggtctttgtagtggaaccaccggagcctaaaaacagtgaaaatggaatgattgacaactgatgataaataagaatc 9705546  T
Q  1321 cgcaaaagcattacatnnnnnnnggcgaaagccaataagatatatccaaaacaacaaaactaagtctcattcagtaccctccagtgtccaccaccaactt 1420  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9705547 cgcaaaagcattacataaaaaaaggcgaaagccaataagatatatccaaaacaacaaaactaagtctcattcagtaccctccagtgtccaccaccaactt 9705646  T
Q  1421 gtggaagggaaaaaaggggtaggaaagttgattctcgatagcgacaacaatctagaatcaagaatatggttcccttaaagtaatcccaatatcatatgct 1520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9705647 gtggaagggaaaaaaggggtaggaaagttgattctcgatagcgacaacaatctagaatcaagaatatggttcccttaaagtaatcccaatatcatatgct 9705746  T
Q  1521 atttttgtgtcccaatcacaacaacaacactcaattcagttccaatacgtgatgattgatgaaaaaaccattataaaccctgaatctgatccaattacca 1620  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9705747 atttttgtgtcccaatcacaacaacaacactcaattcagttccaatacatgatgattgatgaaaaaaccattataaaccctgaatctgatccaattacca 9705846  T
Q  1621 aaaacgaccaagtgaaaaccatgaaactgtaaactaatgtatgaacaaaaacacaaattgggtgtcaaaa 1690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9705847 aaaacgaccaagtgaaaaccatgaaactgtaaactaatgtatgaacaaaaacacaaattgggtgtcaaaa 9705916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 935 - 965
Target Start/End: Complemental strand, 10030188 - 10030158
Alignment:
Q  935 tcaaatagcggcgctatagcactattgcata 965  Q
    |||||||||||||||||||||||||||||||    
T  10030188 tcaaatagcggcgctatagcactattgcata 10030158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 935 - 965
Target Start/End: Complemental strand, 10052101 - 10052071
Alignment:
Q  935 tcaaatagcggcgctatagcactattgcata 965  Q
    |||||||||||||||||||||||||||||||    
T  10052101 tcaaatagcggcgctatagcactattgcata 10052071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 894 - 999
Target Start/End: Original strand, 38346874 - 38346979
Alignment:
Q  894 tcaccattgttctgtgatacactatttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaacagaccgcaattttct 993  Q
    |||| |||||||||||||||||||||||  ||||||||  |||||||||||| ||||||||||| |||  |||   |||||||||  ||||| |||||||    
T  38346874 tcactattgttctgtgatacactatttactacaaaatgttgtcaaatagcggtgctatagcactgttgggtagcaaaatttgaactaaccgctattttct 38346973  T
Q  994 gcgatc 999  Q
    | ||||    
T  38346974 gagatc 38346979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 939 - 997
Target Start/End: Original strand, 5987351 - 5987409
Alignment:
Q  939 atagcggcgctatagcactattgcatagtggaatttgaacagaccgcaattttctgcga 997  Q
    ||||||||||||||||||||||||||| |||||||||| || || || |||||||||||    
T  5987351 atagcggcgctatagcactattgcataatggaatttgatcaaactgctattttctgcga 5987409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 939 - 1012
Target Start/End: Complemental strand, 9634943 - 9634870
Alignment:
Q  939 atagcggcgctatagcactattgcatagtggaatttgaacagaccgcaattttctgcgatccgcaaatgacaac 1012  Q
    ||||||||||||||||| | |||| ||| |||||||||||| ||||| ||||||||  ||| |||| |||||||    
T  9634943 atagcggcgctatagcaatgttgcgtagcggaatttgaacaaaccgctattttctgtaatctgcaattgacaac 9634870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 937 - 976
Target Start/End: Complemental strand, 34689860 - 34689821
Alignment:
Q  937 aaatagcggcgctatagcactattgcatagtggaatttga 976  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  34689860 aaatagcggcactatagcgctattgcatagtggaatttga 34689821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 946 - 992
Target Start/End: Original strand, 6586591 - 6586637
Alignment:
Q  946 cgctatagcactattgcatagtggaatttgaacagaccgcaattttc 992  Q
    |||||||| |||||||||||| |||||||||||| ||||| ||||||    
T  6586591 cgctatagaactattgcatagaggaatttgaacaaaccgctattttc 6586637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 899 - 963
Target Start/End: Original strand, 21754255 - 21754319
Alignment:
Q  899 attgttctgtgatacactatttaggacaaaatgccgtcaaatagcggcgctatagcactattgca 963  Q
    ||||||| | |||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||    
T  21754255 attgttccgcgatacactatttagtacaaattgttgtcaaatagcggcgctatagcactattgca 21754319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 916 - 1003
Target Start/End: Complemental strand, 38884937 - 38884850
Alignment:
Q  916 tatttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaacagaccgcaattttctgcgatccgca 1003  Q
    ||||||| |||||||   || ||||||||  |||||| ||| ||||||||||||||||||||||| |||| |||||| | ||||||||    
T  38884937 tatttagtacaaaatattgtgaaatagcgatgctataacacaattgcatagtggaatttgaacaggccgctattttccgtgatccgca 38884850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 899 - 966
Target Start/End: Complemental strand, 54842240 - 54842173
Alignment:
Q  899 attgttctgtgatacactatttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatag 966  Q
    ||||||||||||||| |||||||| | ||||||  |||||||||| | |||||||| |||||||||||    
T  54842240 attgttctgtgatacgctatttagtataaaatgttgtcaaatagctgtgctatagccctattgcatag 54842173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 889 - 1011
Target Start/End: Complemental strand, 48605321 - 48605199
Alignment:
Q  889 acagatcaccattgttctgtgatacactatttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaacagaccgcaat 988  Q
    ||||| ||| |||||||||||||||| ||||||| || ||||   || || ||||||||||||||| ||  |||| || |||||||||||| ||| |  |    
T  48605321 acagaccactattgttctgtgatacattatttagtacgaaatatggtgaagtagcggcgctatagcgctgctgcacagcggaatttgaacaaacctctgt 48605222  T
Q  989 tttctgcgatccgcaaatgacaa 1011  Q
    ||||||||||  |||| ||||||    
T  48605221 tttctgcgatttgcaattgacaa 48605199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 907 - 980
Target Start/End: Original strand, 3133497 - 3133570
Alignment:
Q  907 gtgatacactatttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaacag 980  Q
    |||||||||||||||| ||||||||  || ||| |||||  |||||||||| | |||| || ||||||||||||    
T  3133497 gtgatacactatttagtacaaaatgatgtgaaacagcgggactatagcactgtagcatggtagaatttgaacag 3133570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 939 - 1012
Target Start/End: Complemental strand, 10354817 - 10354744
Alignment:
Q  939 atagcggcgctatagcactattgcatagtggaatttgaacagaccgcaattttctgcgatccgcaaatgacaac 1012  Q
    |||||||| ||||||||||||||| |||||||||||||||| ||  | |||||| ||||||||| | |||||||    
T  10354817 atagcggctctatagcactattgcgtagtggaatttgaacaaacatctattttccgcgatccgccattgacaac 10354744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 939 - 979
Target Start/End: Original strand, 42822651 - 42822691
Alignment:
Q  939 atagcggcgctatagcactattgcatagtggaatttgaaca 979  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  42822651 atagcggcgctatagcactgttgcatagtggaatttgaaca 42822691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 890 - 979
Target Start/End: Original strand, 9112426 - 9112515
Alignment:
Q  890 cagatcaccattgttctgtgatacactatttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaaca 979  Q
    |||||||| ||||||||| ||||  |||||||| ||| |||   || |||||| ||||||| |||| |||||||||||||||||| ||||    
T  9112426 cagatcactattgttctgcgatatgctatttagtacagaatattgtgaaatagtggcgctacagcaatattgcatagtggaatttaaaca 9112515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 910 - 979
Target Start/End: Original strand, 12138199 - 12138268
Alignment:
Q  910 atacactatttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaaca 979  Q
    ||||| ||||||| ||||||||  || ||| |||||| |||||||||  |||||| ||||||||||||||    
T  12138199 atacaatatttagtacaaaatggtgtaaaaaagcggcactatagcacagttgcattgtggaatttgaaca 12138268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 902 - 979
Target Start/End: Original strand, 18968295 - 18968370
Alignment:
Q  902 gttctgtgatacactatttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaaca 979  Q
    |||||| | |||||||||||| ||||||||  |||||||||||  |||||| ||||||||||||| | ||||||||||    
T  18968295 gttctgagttacactatttagtacaaaatgttgtcaaatagcg--gctataacactattgcatagcgtaatttgaaca 18968370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 938 - 1012
Target Start/End: Complemental strand, 30617265 - 30617191
Alignment:
Q  938 aatagcggcgctatagcactattgcatagtggaatttgaacagaccgcaattttctgcgatccgcaaatgacaac 1012  Q
    |||||||  ||||||||| | |||| |||||||||||||||| ||||| ||||||||| |||| ||| |||||||    
T  30617265 aatagcgatgctatagcattgttgcgtagtggaatttgaacaaaccgctattttctgcaatccccaattgacaac 30617191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 915 - 992
Target Start/End: Original strand, 46937603 - 46937680
Alignment:
Q  915 ctatttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaacagaccgcaattttc 992  Q
    |||||||| |||||||   || |||||| ||||||||| |||| |||||||| |||||||||||| ||||| ||||||    
T  46937603 ctatttagtacaaaatattgtgaaatagtggcgctataacactgttgcatagcggaatttgaacaaaccgctattttc 46937680  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 900 - 943
Target Start/End: Original strand, 15955911 - 15955954
Alignment:
Q  900 ttgttctgtgatacactatttaggacaaaatgccgtcaaatagc 943  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||    
T  15955911 ttgttatgtgatacactatttaggacaaaatgttgtcaaatagc 15955954  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 919 - 998
Target Start/End: Original strand, 30882491 - 30882570
Alignment:
Q  919 ttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaacagaccgcaattttctgcgat 998  Q
    |||| |||||||| ||||||||||||||  ||||||| |||||  ||| ||| |||||||| || || ||||||||||||    
T  30882491 ttagtacaaaatgacgtcaaatagcggcaatatagcattattgagtagaggagtttgaacaaactgctattttctgcgat 30882570  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 893 - 935
Target Start/End: Original strand, 52695369 - 52695411
Alignment:
Q  893 atcaccattgttctgtgatacactatttaggacaaaatgccgt 935  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||    
T  52695369 atcactattgttctgtgatacactatttagtacaaaataccgt 52695411  T

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Target: chr7 (Bit Score: 33; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 939 - 979
Target Start/End: Complemental strand, 21173986 - 21173946
Alignment:
Q  939 atagcggcgctatagcactattgcatagtggaatttgaaca 979  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  21173986 atagcggcgctatagcactattgcattatggaatttgaaca 21173946  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 899 - 985
Target Start/End: Original strand, 5336521 - 5336607
Alignment:
Q  899 attgttctgtgatacactatttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaacagaccgc 985  Q
    |||||||  ||||||||| ||||| ||||| ||  || ||||||||  ||||||||||||| | ||||| ||||||||||| |||||    
T  5336521 attgttccatgatacactgtttagcacaaagtgttgttaaatagcgttgctatagcactatagtatagtagaatttgaacaaaccgc 5336607  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 899 - 979
Target Start/End: Complemental strand, 38622923 - 38622845
Alignment:
Q  899 attgttctgtgatacactatttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaaca 979  Q
    |||||||  ||||||||||||||| ||||||||  |||||||||||  ||||||||| | ||| |||| | ||||||||||    
T  38622923 attgttccatgatacactatttagcacaaaatgttgtcaaatagcg--gctatagcattgttgtatagcgaaatttgaaca 38622845  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 934 - 979
Target Start/End: Original strand, 42114917 - 42114962
Alignment:
Q  934 gtcaaatagcggcgctatagcactattgcatagtggaatttgaaca 979  Q
    |||||||||||||||||||||  | ||||| |||||||||||||||    
T  42114917 gtcaaatagcggcgctatagccatgttgcacagtggaatttgaaca 42114962  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 899 - 1012
Target Start/End: Complemental strand, 10156718 - 10156605
Alignment:
Q  899 attgttctgtgatacactatttaggacaaaatgccgtcaaatagcggcgctatagcactattgcatagtggaatttgaacagaccgcaattttctgcgat 998  Q
    ||||||||| || |||||||| || | ||||||  |||||||||||||  |||| |||||||| |||| | ||||  |||| ||||| |||||| | |||    
T  10156718 attgttctgcgacacactattaagtataaaatgttgtcaaatagcggccttataacactattgtatagcgaaattcaaacaaaccgctattttcggtgat 10156619  T
Q  999 ccgcaaatgacaac 1012  Q
    | |||| |||||||    
T  10156618 ctgcaattgacaac 10156605  T

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