View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_10 (Length: 491)
Name: NF1911_low_10
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 33 - 491
Target Start/End: Complemental strand, 14871378 - 14870923
Alignment:
| Q |
33 |
agaacgatcaagttaaataacaagactaattatatttttattttgataattaattcattgaaataagctcccaacaacgattttgctttgatttggcatt |
132 |
Q |
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| T |
14871378 |
agaacgatcaagttaaataacaagactaattatatttttattttgataattaattcattgaaataagctcccaacaacgattttgctttgatttggcatt |
14871279 |
T |
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| Q |
133 |
gaacgcatccacatgagaaatccatccaccttcttcattccgattattcatggaagcagctgcagaaagatccaatccaaccatgcgctgcggttgtagg |
232 |
Q |
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| T |
14871278 |
gaacacatccacatgagaaatccatccaccttcttcattccgatt---catggaagcagctgcagaaagatccaatccaaccatgcgctgcggttgtagg |
14871182 |
T |
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| Q |
233 |
cgaggtgccaagatggattgctgctaaaggcactgcatgagtttatatcatggccgaatcttgtggagaagctctctcttggtataatagtttgtggtaa |
332 |
Q |
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| T |
14871181 |
cgaggtgccaagatggattgctgctaaaggcactgcaggagtttatatcatggccgaatcttgtggagaagctctctcttggtataatagtttgtggtaa |
14871082 |
T |
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| Q |
333 |
aagtaaaaggtagcgaaaatctttactttcatgattttaacataatacaactgtattcagtccaacacaagnnnnnnnggctcaagaaccggctaaatct |
432 |
Q |
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| T |
14871081 |
aagtaaaaggtagcgaaaatctttactttcatgattctaacataatacaaccgtattcagtccaacacaagtttttttggctcaagaaccggctaaatct |
14870982 |
T |
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| Q |
433 |
caccgtctactagcgggtgtcttaattgaagtcacaacaatatggactagccgaacata |
491 |
Q |
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| T |
14870981 |
caccgtctactagcgggtgtctcaattgaagtcacaacaatatggactagccgaacata |
14870923 |
T |
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