View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_12 (Length: 449)
Name: NF1911_low_12
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 50 - 423
Target Start/End: Original strand, 13694973 - 13695347
Alignment:
| Q |
50 |
tataacaaaccatctctaaccttatcgtttttctttaactcacattttcaaatatcacaaaatacgcttaatcaaataattcatcaaatcatcaattaat |
149 |
Q |
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| T |
13694973 |
tataacaaactatctctaaccttatcgtttttctttaactcacattttcaaatatcacaaaatacgcttagtcaaataattcatcaaatcatcaattaat |
13695072 |
T |
|
| Q |
150 |
gggaaaaatagctatttatacgggcaagacttttactataatgagacaaatatgcatcatcaaagagaaagt-aaccattctgaaaacttaattcatt-t |
247 |
Q |
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| T |
13695073 |
ggaaaaaatagctatttatacaggcaagacttttactataatgagacaaatatgcatcatcaaagagaaagtaaaccattctgaaaacttaattcattgt |
13695172 |
T |
|
| Q |
248 |
catatttctttcatgattaattcatttcaccgcctcctagataataattaactcttcattataaccatgccctaccttaatacttttagagttatatata |
347 |
Q |
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| T |
13695173 |
catatttctttcatgattaattcatatcaccacctcctagataataatcaacccttcattataaccatgccctaccttaatacttttagagttatatata |
13695272 |
T |
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| Q |
348 |
tcatggtcaacctaagatgggaggaaaagcattaatctacctaagagttccttaattaaagtagccgaattcattc |
423 |
Q |
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| T |
13695273 |
tcatggtcaacctaagatgggaggaaaagcattaacctatctaagagttccttaattaaagtag-cgaattcattc |
13695347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 23959974 - 23959927
Alignment:
| Q |
61 |
atctctaaccttatcgtttttctttaactcacattttcaaatatcaca |
108 |
Q |
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| T |
23959974 |
atctctaaccttatcgcttttgtttaactcacacattcaaatatcaca |
23959927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 20179824 - 20179871
Alignment:
| Q |
61 |
atctctaaccttatcgtttttctttaactcacattttcaaatatcaca |
108 |
Q |
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||||||||| |||||| |||||||||| |||||| ||||||||||||| |
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| T |
20179824 |
atctctaactttatcgcttttctttaagtcacatcttcaaatatcaca |
20179871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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