View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_13 (Length: 445)
Name: NF1911_low_13
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 31263847 - 31264258
Alignment:
| Q |
18 |
cacacaacattaaagttaagacggtgatacaatagaaaactttaataatattaatgcaacttaataaattttcaacaattattgtttacgcttaattgcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31263847 |
cacacaacattaaagttaagacggtgatacaatagaaaactttaataatattaatgcaacttaataaattttcaacaattattgtttacgcttaattgcg |
31263946 |
T |
|
| Q |
118 |
atatgatctatacaattgattaacgatgacaatagtataaacagatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31263947 |
atatgatctatacaattgattaacgatgacaatagtataaacagatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaa |
31264046 |
T |
|
| Q |
218 |
atggtacaatagatgaaggtttgaggagatagtcctaacaatatttgagggtttgattgagatgaagtcataacattgagatccataaatataaattatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264047 |
atggtacaatagatgaaggtttgaggagatagtcctaacaatatttgagggtttgattgagatgaagtcataacattgagatccataaatataaattatt |
31264146 |
T |
|
| Q |
318 |
acttatcggataaattaccatctttccaatattacggagatgctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgc |
417 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
31264147 |
actcatcggataaattaccatctttccaatattacggagatgctctattccatgtctttcaactttccttgaattcagacttctgttgcgacaaatttgc |
31264246 |
T |
|
| Q |
418 |
atctgagtgttc |
429 |
Q |
| |
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|| ||||||||| |
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| T |
31264247 |
atttgagtgttc |
31264258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 161 - 429
Target Start/End: Original strand, 12212406 - 12212662
Alignment:
| Q |
161 |
gatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttga-ggagatagtcctaacaat |
259 |
Q |
| |
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|||| ||||||||||||||||||||| |||||| ||||| ||||| ||||| ||||||||||||||| ||| ||||| | |||||||||||||||||| |
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| T |
12212406 |
gatggatgaggaaatataaaaaccaaggtagaataattatatagatggatagttgaaatggtacaatacatgt-ggtttaatggagatagtcctaacaat |
12212504 |
T |
|
| Q |
260 |
atttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagat |
358 |
Q |
| |
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| ||| ||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||| || | |||| |||||||| |
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| T |
12212505 |
a-----------gatagagat--agtcataacattgagaaccataaatataaattattactcatcggataaatcatcatctgtctagtattgacggagat |
12212591 |
T |
|
| Q |
359 |
gctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttc |
429 |
Q |
| |
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|
| T |
12212592 |
gctctattccacgtaattcaacttcccttgaatttagacatctgttgagacgaatttgcatctgattgttc |
12212662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 161 - 429
Target Start/End: Complemental strand, 13815186 - 13814929
Alignment:
| Q |
161 |
gatgcatgaggaaatataa-aaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttga-ggagatagtcctaacaa |
258 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||||||||||||| ||| ||||| | ||||||||||||||||| |
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| T |
13815186 |
gatggatgaggaaatataacaaaccaaggtagaacatttatatagatggatagttgaaatggtacaatacatgt-ggtttaatggagatagtcctaacaa |
13815088 |
T |
|
| Q |
259 |
tatttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggaga |
357 |
Q |
| |
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|| ||| ||||| |||||||||| ||||| |||||| |||||||||||||| ||| ||||||| ||||||| |||| |||| ||||||| |
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| T |
13815087 |
ta-----------gatggagat--agtcataacactgagaaccataagtataaattattactcatcagataaatcaccatctatccagtattgacggaga |
13815001 |
T |
|
| Q |
358 |
tgctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttc |
429 |
Q |
| |
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|||||||||||| || |||||||| | ||||||| |||| ||||||||||| ||||||||||||| ||||| |
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|
| T |
13815000 |
tgctctattccacgtaattcaacttcccttgaatttagacatctgttgagacgaatttgcatctgattgttc |
13814929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 161 - 429
Target Start/End: Original strand, 22144589 - 22144845
Alignment:
| Q |
161 |
gatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttga-ggagatagtcctaacaat |
259 |
Q |
| |
|
|||| ||||||| ||||| |||| || |||||||||||| ||||| ||||| ||||||||||||||| ||| ||||| | |||||||||||||||||| |
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| T |
22144589 |
gatggatgaggacatatataaactaaggtagaacaattatatagatggatagttgaaatggtacaatacatgt-ggtttaatggagatagtcctaacaat |
22144687 |
T |
|
| Q |
260 |
atttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagat |
358 |
Q |
| |
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| ||| ||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||| |||| |||| |||||||| |
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|
| T |
22144688 |
a-----------gatggagat--agtcataacattgcgaaccataaatataaattattactcatcggataaatcaccatctgtccagtattgacggagat |
22144774 |
T |
|
| Q |
359 |
gctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttc |
429 |
Q |
| |
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||||||||||| || |||||||| | ||||||| |||| | ||||||||| ||||||||||||| ||||| |
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|
| T |
22144775 |
gctctattccacgtaattcaacttcccttgaatttagacatttgttgagacgaatttgcatctgattgttc |
22144845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 15852342 - 15852247
Alignment:
| Q |
146 |
acaatagtataaacagatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttga |
241 |
Q |
| |
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||||| |||||||| |||| |||| |||||||||||||||| |||||||||||| ||| | ||||| ||||||||||||||| ||| ||||||| |
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| T |
15852342 |
acaatggtataaacggatggatgatgaaatataaaaaccaaggtagaacaattatatacatggatagttgaaatggtacaatacatgtgggtttga |
15852247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 15852404 - 15852351
Alignment:
| Q |
18 |
cacacaacattaaagttaagacggtgatacaatagaaaactttaataatattaa |
71 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| ||||||||| |||| |
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|
| T |
15852404 |
cacacaacattaaagttaagactatcatacaatagaaaaatttaataatgttaa |
15852351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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