View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_15 (Length: 438)

Name: NF1911_low_15
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_15
NF1911_low_15
[»] chr1 (5 HSPs)
chr1 (13-438)||(8866615-8867040)
chr1 (13-419)||(8862749-8863162)
chr1 (123-328)||(9087303-9087508)
chr1 (183-328)||(9126497-9126642)
chr1 (128-250)||(9071002-9071127)


Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Original strand, 8866615 - 8867040
Alignment:
Q  13 aaaatcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgggtccgaaattgaaagttggtttgattcgtagtc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8866615 aaaatcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgggtccgaaattgaaagttggtttgattcgtagtc 8866714  T
Q  113 tatgtaatctacaaagaatttgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactcaggataaaca 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8866715 tatgtaatctacaaagaatatgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactcaggataaaca 8866814  T
Q  213 cattcatgttgtgatgattccttaacaagttggaaggggaatcgaataaacggttcataaggtccacatgacaattctctgcactctgcatgactgctgc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  8866815 cattcatgttgtgatgattccttaacaagttggaaggggaatcgaataatcggttcgtaaggtccacatgacaattctctgcactcttcatgactgctgc 8866914  T
Q  313 tgttattgataagctgtagtagaaacagcagcatgatgaaactgtgtgatcttgccattctaatgttacagggatttgtttttgagcctaaaagaaagtg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8866915 tgttattgataagctgtagtagaaacagcagcatgatgaaactgtgtgatcttgccattctaatgttacagggatttgtttttgagcctaaaagaaagtg 8867014  T
Q  413 ataagaaccaaactctaatgcttctt 438  Q
    ||||||||||||||||||||||||||    
T  8867015 ataagaaccaaactctaatgcttctt 8867040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 13 - 419
Target Start/End: Original strand, 8862749 - 8863162
Alignment:
Q  13 aaaatcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgggtccgaaattgaaagttggtttgattcgtagtc 112  Q
    |||||||||||||| ||||||| |  ||||||||||||||||  ||||  | |||||||||||| ||||||   | ||||| | ||||||||||||||||    
T  8862749 aaaatcggtaaggtagaaatgatgagttgttaagtttcagaaactttttaggaatgcaattgtccgggtccatcactgaaattcggtttgattcgtagtc 8862848  T
Q  113 tatgtaatctacaaagaatttgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactcaggataaaca 212  Q
    |||||||| ||||  |||||||| |||||||||||||||||| |  ||||||||||| | |||||||| |||||||||||||||||||||||||| |  |    
T  8862849 tatgtaatatacacggaatttgattggacctgaagtggtagagaggaccatcatggtttccttgttttcagtacaatataggcaaaactcaggatgagta 8862948  T
Q  213 cattcatgttgtgatgattccttaacaagttggaaggggaatcgaata------aacggttcataaggtccacatgacaattctctgcactctgcatgac 306  Q
    |||| || |||||||||||||| ||| |||||||||||||||||||||      |     |  ||||||||||| ||  |||||||||||||  ||  ||    
T  8862949 cattgatcttgtgatgattcctcaactagttggaaggggaatcgaatattttgcagattgtggtaaggtccacaagatgattctctgcactcgtcaatac 8863048  T
Q  307 tgctgctgttattgataagctgtagtagaaacagcagcatgatgaaactgtgtgatcttgccattctaatgttacagggattt-gtttttgagcctaaaa 405  Q
    ||||||| |||| ||||||| ||||||||| |||||||||||| || || |||| || || ||| | ||| |||||||| |||  ||||| |||| ||||    
T  8863049 tgctgcttttatggataagcagtagtagaagcagcagcatgatcaagctatgtgctcctgtcatccaaatattacagggttttcttttttcagcccaaaa 8863148  T
Q  406 gaaagtgataagaa 419  Q
    ||| ||||||||||    
T  8863149 gaatgtgataagaa 8863162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 123 - 328
Target Start/End: Original strand, 9087303 - 9087508
Alignment:
Q  123 acaaagaatttgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactcaggataaacacattcatgtt 222  Q
    ||||||||||||| |||||||||| ||| ||| | ||| ||||||||  |||| |||| ||||||||||| ||||||||||||||||||||||| || ||    
T  9087303 acaaagaatttgattggacctgaattggaagagagcacaatcatggttctcttatttttagtacaatataagcaaaactcaggataaacacattgatctt 9087402  T
Q  223 gtgatgattccttaacaagttggaaggggaatcgaataaacggttcataaggtccacatgacaattctctgcactctgcatgactgctgctgttattgat 322  Q
    |||||||||||||||| |||||||| ||||||||||||| ||| || | ||||||||| ||||||||| | |||||  |||||  ||||||| |||||||    
T  9087403 gtgatgattccttaacgagttggaatgggaatcgaataatcggctcgttaggtccacaggacaattctgtccactcgtcatgatagctgctgctattgat 9087502  T
Q  323 aagctg 328  Q
    ||||||    
T  9087503 aagctg 9087508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 183 - 328
Target Start/End: Original strand, 9126497 - 9126642
Alignment:
Q  183 gtacaatataggcaaaactcaggataaacacattcatgttgtgatgattccttaacaagttggaaggggaatcgaataaacggttcataaggtccacatg 282  Q
    |||||||| ||||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||| ||||||||| ||| || | || |||||| |    
T  9126497 gtacaatacaggcaaaactcaggataaacacattgatcttgtgatgattccttaacgagttggaatgggcatcgaataaccggctcgttagttccacagg 9126596  T
Q  283 acaattctctgcactctgcatgactgctgctgttattgataagctg 328  Q
    |||||||| |  ||||  |||||  ||||||| |||||| ||||||    
T  9126597 acaattctgtcgactcgtcatgatagctgctgctattgaaaagctg 9126642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 9071002 - 9071127
Alignment:
Q  128 gaatttgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactc---aggataaacacattcatgttgt 224  Q
    |||||||| ||||||||||| |||||| |  || |||||||| ||||| |||| ||||||||||||||| |||||   |||||||||||||| || ||||    
T  9071002 gaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgatcttgt 9071101  T
Q  225 gatgattccttaacaagttggaaggg 250  Q
    |||||||||||||| | |||||||||    
T  9071102 gatgattccttaacgatttggaaggg 9071127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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