View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_16 (Length: 423)

Name: NF1911_low_16
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_16
NF1911_low_16
[»] chr3 (4 HSPs)
chr3 (21-170)||(13491856-13492005)
chr3 (272-409)||(13491619-13491756)
chr3 (18-94)||(25596902-25596978)
chr3 (18-70)||(25601731-25601783)
[»] chr1 (1 HSPs)
chr1 (21-118)||(14288901-14288998)
[»] chr7 (3 HSPs)
chr7 (22-118)||(45498177-45498273)
chr7 (21-121)||(32413597-32413697)
chr7 (45-121)||(6889119-6889195)
[»] chr5 (1 HSPs)
chr5 (18-112)||(25064233-25064327)
[»] chr6 (3 HSPs)
chr6 (48-118)||(7115578-7115648)
chr6 (48-118)||(7120650-7120720)
chr6 (48-118)||(7124054-7124124)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 9e-77; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 13492005 - 13491856
Alignment:
Q  21 agattcttccatctcgcggacagtatgcaagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcaggcaactcactga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13492005 agattcttccatctcgcggacagtatgcaagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcaggcaactcactga 13491906  T
Q  121 gattgtctttgttttcagttcgctttagtctcttcattgtcgacccaaat 170  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13491905 gattgtctttgttttcagttcgctttagtctcttcattctcgacccaaat 13491856  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 272 - 409
Target Start/End: Complemental strand, 13491756 - 13491619
Alignment:
Q  272 tcaattgagaaaggagaaatacctttggcgaggtgttgtttgtgattgatgataattgagacaaaactcttcttctacctttcgcctcttatcaccgtcc 371  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13491756 tcaattgaaaaaggagaaatacctttggcgaggtgttgtttgtgattgatgataattgagacaaaactcttcttctacctttcgcctcttatcaccgtcg 13491657  T
Q  372 tatcgtaggacaacccactttcatgtacgagccctagt 409  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13491656 tatcgtaggacaacccactttcatgtacgagccctagt 13491619  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 25596978 - 25596902
Alignment:
Q  18 caaagattcttccatctcgcggacagtatgcaagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaag 94  Q
    |||||||||||||||||||  ||||  |||||||||||||| |||   ||||| | |||||| |||| |||||||||    
T  25596978 caaagattcttccatctcgtagacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaag 25596902  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 25601783 - 25601731
Alignment:
Q  18 caaagattcttccatctcgcggacagtatgcaagtttgaacagcaagtttggt 70  Q
    ||||||| ||||||||| | |||||  |||||||||||||||||| |||||||    
T  25601783 caaagatacttccatcttgtggacaaaatgcaagtttgaacagcatgtttggt 25601731  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 14288901 - 14288998
Alignment:
Q  21 agattcttccatctcgcggacagtatgcaagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcaggcaactcact 118  Q
    ||||||||||||||   ||| ||||||||||||||||| ||   |||||| | ||||||||||| |||||||||||||||||||||||| || |||||    
T  14288901 agattcttccatcttttggagagtatgcaagtttgaacggcgtatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcact 14288998  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 45498177 - 45498273
Alignment:
Q  22 gattcttccatctcgcggacagtatgcaagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcaggcaactcact 118  Q
    |||||||||||||   ||| ||||||||||||||||| ||   |||||| | ||||||||||| |||||||||||||||||||||||| || |||||    
T  45498177 gattcttccatcttttggagagtatgcaagtttgaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcact 45498273  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 32413697 - 32413597
Alignment:
Q  21 agattcttccatctcgcggacagtatgcaagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcaggcaactcactga 120  Q
    |||||||||||||| | |||||  |||||||||||||| ||  ||||||||| |||| | || || |||||||||||||| |||||||  || |||||||    
T  32413697 agattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcactga 32413598  T
Q  121 g 121  Q
    |    
T  32413597 g 32413597  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 6889195 - 6889119
Alignment:
Q  45 atgcaagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcaggcaactcactgag 121  Q
    |||||||||||||||||   | |||||||||||||||| || |||||||| | ||| ||||| || || ||||||||    
T  6889195 atgcaagtttgaacagcgtctatggtgtccaaaaaagagagtatgtgaagaataacacaatcgggtaagtcactgag 6889119  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 25064327 - 25064233
Alignment:
Q  18 caaagattcttccatctcgcggacagtatgcaagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcaggcaa 112  Q
    |||||||| |||||||| | ||||| |||||| ||||| || ||| |||||||||| | ||| || || |||||||||| ||| |||||||||||    
T  25064327 caaagattgttccatcttggggacaatatgcatgtttggactgcatgtttggtgtctagaaaggagagtatgtgaagtagaacacaatcaggcaa 25064233  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 7115578 - 7115648
Alignment:
Q  48 caagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcaggcaactcact 118  Q
    ||||||||||| ||   |||||||| ||||||||| || |||||||||||||| |||||||| || |||||    
T  7115578 caagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcact 7115648  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 7120650 - 7120720
Alignment:
Q  48 caagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcaggcaactcact 118  Q
    ||||||||||| ||   |||||||| ||||||||| || |||||||||||||| |||||||| || |||||    
T  7120650 caagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcact 7120720  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 7124054 - 7124124
Alignment:
Q  48 caagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcaggcaactcact 118  Q
    ||||||||||| ||   |||||||| ||||||||| || |||||||||||||| |||||||| || |||||    
T  7124054 caagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcact 7124124  T

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