View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_17 (Length: 422)
Name: NF1911_low_17
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 22883475 - 22883281
Alignment:
| Q |
7 |
tccaagaaaatccaccgactttttataagtttccatcacaattaatattgatccaattcaggtagacgcttggacaaaaagatatttatatcgtacaaaa |
106 |
Q |
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| T |
22883475 |
tccaacaagatccaccgactttttataagtt-ccatcacagttaatcttgatccaattcaggtagacgcttgaacaaaaagagatttctatcgtacaaaa |
22883377 |
T |
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| Q |
107 |
atttgtaaatgacacatgaattaaaacatataattaatttaatattagaaagatagattataatctacttgcaaaattactcttcatgaatagtat |
202 |
Q |
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| T |
22883376 |
atttgtaaatgacacatgaattaaaacatataattaattttatattagaaagatagattataatctacttgcaaaattactcttcatgaatagtat |
22883281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 326 - 422
Target Start/End: Complemental strand, 22883198 - 22883101
Alignment:
| Q |
326 |
aatttatttttcttgaaatggtagctttt-gtggggtcatgagaatacgtacaatagtgtttgaacattgagtaccaatttggttatcggttgaaatt |
422 |
Q |
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| T |
22883198 |
aatttatttttgttgaaatgatagctttttgtggggtcatgagaatacgtacaatagtgtttgaacattgagtaccaatttggttatcggttgaaatt |
22883101 |
T |
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