View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_18 (Length: 421)

Name: NF1911_low_18
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_18
NF1911_low_18
[»] chr1 (8 HSPs)
chr1 (18-406)||(23336375-23336761)
chr1 (219-265)||(7015712-7015758)
chr1 (219-265)||(7906351-7906397)
chr1 (219-265)||(50199501-50199547)
chr1 (224-265)||(39238745-39238786)
chr1 (219-268)||(40454193-40454242)
chr1 (232-265)||(47469070-47469103)
chr1 (204-264)||(1721149-1721209)
[»] chr7 (13 HSPs)
chr7 (18-156)||(37140605-37140743)
chr7 (224-265)||(42887183-42887224)
chr7 (229-265)||(22706053-22706089)
chr7 (224-265)||(19126766-19126807)
chr7 (224-265)||(21285378-21285419)
chr7 (224-265)||(29658297-29658338)
chr7 (219-264)||(37410507-37410552)
chr7 (224-265)||(42286353-42286394)
chr7 (229-265)||(18503477-18503513)
chr7 (229-265)||(20101649-20101685)
chr7 (211-267)||(32834326-32834382)
chr7 (229-265)||(34891243-34891279)
chr7 (229-257)||(49005503-49005531)
[»] chr2 (9 HSPs)
chr2 (37-156)||(25901597-25901716)
chr2 (229-265)||(11050754-11050790)
chr2 (224-263)||(17982523-17982562)
chr2 (229-263)||(9330500-9330534)
chr2 (224-265)||(3037647-3037688)
chr2 (224-265)||(18386837-18386878)
chr2 (224-264)||(18065283-18065323)
chr2 (229-265)||(34107308-34107344)
chr2 (229-265)||(36101696-36101732)
[»] chr8 (6 HSPs)
chr8 (41-156)||(891120-891235)
chr8 (229-265)||(8740681-8740717)
chr8 (229-265)||(28378846-28378882)
chr8 (224-265)||(7314762-7314803)
chr8 (224-265)||(14012641-14012682)
chr8 (229-265)||(44444581-44444617)
[»] chr4 (13 HSPs)
chr4 (80-144)||(40300320-40300384)
chr4 (224-265)||(34773708-34773749)
chr4 (219-264)||(36045854-36045899)
chr4 (224-265)||(56531261-56531302)
chr4 (219-262)||(18497416-18497459)
chr4 (219-262)||(20610763-20610806)
chr4 (229-263)||(24680085-24680119)
chr4 (219-265)||(49039470-49039516)
chr4 (219-264)||(38657564-38657609)
chr4 (224-265)||(41003197-41003237)
chr4 (224-265)||(53815725-53815766)
chr4 (229-265)||(3036052-3036088)
chr4 (229-265)||(32760679-32760715)
[»] chr6 (4 HSPs)
chr6 (227-265)||(2816925-2816963)
chr6 (218-265)||(10455765-10455812)
chr6 (219-265)||(17751362-17751408)
chr6 (219-265)||(20858408-20858454)
[»] chr3 (9 HSPs)
chr3 (224-265)||(42271038-42271079)
chr3 (218-265)||(19137642-19137689)
chr3 (219-265)||(4045659-4045705)
chr3 (219-265)||(16874215-16874261)
chr3 (219-268)||(2903732-2903781)
chr3 (224-265)||(33206786-33206827)
chr3 (229-265)||(4860198-4860234)
chr3 (229-265)||(28550316-28550352)
chr3 (229-265)||(34898764-34898800)
[»] chr5 (4 HSPs)
chr5 (227-265)||(962320-962358)
chr5 (219-265)||(35813267-35813313)
chr5 (219-265)||(40384275-40384321)
chr5 (99-156)||(4059101-4059158)
[»] scaffold0036 (1 HSPs)
scaffold0036 (224-265)||(25055-25096)
[»] scaffold0009 (1 HSPs)
scaffold0009 (224-265)||(108386-108427)
[»] scaffold0002 (1 HSPs)
scaffold0002 (224-265)||(451400-451441)
[»] scaffold0168 (1 HSPs)
scaffold0168 (219-263)||(34060-34104)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 23336761 - 23336375
Alignment:
Q  18 gcatgtagaatggttgagtagttttcaaagctctaagttcttgaagttctttttgtaatcttctattctcttctgttaatgtctcacaacatctcttcaa 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23336761 gcatgtagaatggttgagtagttttcaaagctctaagctcttgaagttccttttgtaatcttctattctcttctgttaatgtctcacaacatctcttcaa 23336662  T
Q  118 atactcacaatccacttctgtttgctttaacttcgtcctacaaaatcacaaattccaaaccaaaactttaataaaaaatagtctctgctcaggtgatagc 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23336661 atactcacaatccacttctgtttgctttaactttgtcctacaaaatcacaaattccaaaccaaaactttaataaaaaatagtctctgctcaggtggtagc 23336562  T
Q  218 aacatccattgttatatgcaggggctgaggttcgaactccggacacccaacacgttcaaaagaattaaagtattac-annnnnnnatcttattgttttgg 316  Q
    ||||| |||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||| ||||||||| |       ||||||| |||||||    
T  23336561 aacatgcattgttatatgcaggggttgtggttcaaactccggacaccccacacgttcaaaagaattcaagtattacaatttttttatcttatggttttgg 23336462  T
Q  317 tttagttcaaacaaaatttattcatattagaatactagtatttgattttaattcctcaaaatagactctaaaataaaatattagaaaaat 406  Q
    |||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23336461 tttagttcaaacaaaatttattcatattagaatac---tacttgattttaattcctcaaaatagactctaaaataaaatattagaaaaat 23336375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 7015758 - 7015712
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||||||||| |||||||||||||||||||||| ||||||    
T  7015758 acatgcattgttatatgtaggggctgaggttcgaactccgaacaccc 7015712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 7906397 - 7906351
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| ||||||||||||||||||||| ||||||||| | ||||||||    
T  7906397 acatgcattgttatatgcaggggctggggttcgaacccgggacaccc 7906351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 50199547 - 50199501
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| ||||||||||||||||||| | ||||||||| ||||||||||    
T  50199547 acatgcattgttatatgcaggggccggggttcgaaccccggacaccc 50199501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 39238745 - 39238786
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||||||||||| ||||||||||| ||||||||||    
T  39238745 cattattatatgcaggggccgaggttcgaaccccggacaccc 39238786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 40454242 - 40454193
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacacccaac 268  Q
    |||| |||| ||||||||| |||| | |||||||||||||||||||||||    
T  40454242 acatgcattattatatgcaagggccggggttcgaactccggacacccaac 40454193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 47469103 - 47469070
Alignment:
Q  232 tatgcaggggctgaggttcgaactccggacaccc 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  47469103 tatgcaggggctgaggttcgaaccccggacaccc 47469070  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 1721149 - 1721209
Alignment:
Q  204 gctcaggtgatagcaacatccattgttatatgcaggggctgaggttcgaactccggacacc 264  Q
    |||||| || ||| ||||| ||||||||||||||||||| | | ||||||| |||||||||    
T  1721149 gctcagttggtaggaacatgcattgttatatgcaggggccgggtttcgaaccccggacacc 1721209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 37140743 - 37140605
Alignment:
Q  18 gcatgtagaatggttgagtagttttcaaagctctaagttcttgaagttctttttgtaatcttctattctcttctgttaatgtctcacaacatctcttcaa 117  Q
    |||||||||||||||||| ||||||||||||||| | ||| |||||||| |||||||||||| |||| |||||||| |  |||||||||||||| || ||    
T  37140743 gcatgtagaatggttgagaagttttcaaagctctcaattcctgaagttccttttgtaatcttttattttcttctgtcagagtctcacaacatctttttaa 37140644  T
Q  118 atactcacaatccacttctgtttgctttaacttcgtcct 156  Q
     || |||||||||||||| ||||||||| |||| |||||    
T  37140643 gtattcacaatccacttccgtttgctttgacttggtcct 37140605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 42887183 - 42887224
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  42887183 cattattatatgcaggggctgaggttcgaaccccggacaccc 42887224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 22706089 - 22706053
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||||||||||| ||||||||||||||    
T  22706089 ttatatgcaggggctgaggttcaaactccggacaccc 22706053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 19126766 - 19126807
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||| ||||||||||||||||||| ||||||||||    
T  19126766 cattattatatacaggggctgaggttcgaaccccggacaccc 19126807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 21285419 - 21285378
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    ||||||||||||||||||| | ||||||||| ||||||||||    
T  21285419 cattgttatatgcaggggccggggttcgaaccccggacaccc 21285378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 29658338 - 29658297
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    ||||||||||||||||||| | ||||||||| ||||||||||    
T  29658338 cattgttatatgcaggggccggggttcgaaccccggacaccc 29658297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 37410552 - 37410507
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacacc 264  Q
    |||| ||||||||||||||||||   ||||||||||||||||||||    
T  37410552 acatgcattgttatatgcaggggtcaaggttcgaactccggacacc 37410507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 42286353 - 42286394
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||| ||||||||||||| |||| ||||||||||    
T  42286353 cattgttatatgtaggggctgaggtttgaacaccggacaccc 42286394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 18503513 - 18503477
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||||||||||||||| || |||||||    
T  18503513 ttatatgcaggggctgaggttcgaaccccagacaccc 18503477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 20101685 - 20101649
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||| | ||||||||||||||||||||    
T  20101685 ttatatgcaggggccggggttcgaactccggacaccc 20101649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 32834382 - 32834326
Alignment:
Q  211 tgatagcaacatccattgttatatgcaggggctgaggttcgaactccggacacccaa 267  Q
    |||||| ||||| ||||||||||||||||||| |  |||| ||||||||||| ||||    
T  32834382 tgataggaacatgcattgttatatgcaggggccggcgttcaaactccggacaaccaa 32834326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 34891243 - 34891279
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||| | ||||||||||||||||||||    
T  34891243 ttatatgcaggggccggggttcgaactccggacaccc 34891279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 49005503 - 49005531
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactcc 257  Q
    |||||||||||||||||||||||||||||    
T  49005503 ttatatgcaggggctgaggttcgaactcc 49005531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 25901597 - 25901716
Alignment:
Q  37 agttttcaaagctctaagttcttgaagttctttttgtaatcttctattctcttctgttaatgtctcacaacatctcttcaaatactcacaatccacttct 136  Q
    |||||| |||||||| | |||||||||||| || ||||  || ||||| |||||||||| ||| ||||| |||||||| || || |||||||||||||||    
T  25901597 agtttttaaagctcttaattcttgaagttccttgtgtagcctcctattttcttctgttagtgtttcacagcatctctttaagtattcacaatccacttct 25901696  T
Q  137 gtttgctttaacttcgtcct 156  Q
    |||||||| ||||| |||||    
T  25901697 gtttgcttcaacttagtcct 25901716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 11050790 - 11050754
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11050790 ttatatgcaggggctggggttcgaactccggacaccc 11050754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 17982562 - 17982523
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacac 263  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  17982562 cattgttatatgcagggactgaggttcgaactctggacac 17982523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 9330534 - 9330500
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacac 263  Q
    |||||||||||||||||||| ||||||||||||||    
T  9330534 ttatatgcaggggctgaggtgcgaactccggacac 9330500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 3037688 - 3037647
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    ||||||||||||||||||| | ||||||||| ||||||||||    
T  3037688 cattgttatatgcaggggccggggttcgaaccccggacaccc 3037647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 18386878 - 18386837
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| ||||||| |||||||| ||||||||||||||||||||    
T  18386878 cattattatatgtaggggctggggttcgaactccggacaccc 18386837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 18065283 - 18065323
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacacc 264  Q
    |||||||||||||||||| |||||||||||| ||| |||||    
T  18065283 cattgttatatgcaggggttgaggttcgaaccccgaacacc 18065323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 34107308 - 34107344
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  34107308 ttatatgcaggggttgaggttcgaactccagacaccc 34107344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 36101696 - 36101732
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  36101696 ttatatgcaggggctggggttcgaaccccggacaccc 36101732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 891235 - 891120
Alignment:
Q  41 ttcaaagctctaagttcttgaagttctttttgtaatcttctattctcttctgttaatgtctcacaacatctcttcaaatactcacaatccacttctgttt 140  Q
    ||||| || ||||| ||||| | ||| ||||| || || |||||||| || ||||  |||||||| ||||||||||| ||||||||||||||||| ||||    
T  891235 ttcaatgccctaagctcttgcacttccttttgcaacctcctattctcatcagttagagtctcacagcatctcttcaagtactcacaatccacttcagttt 891136  T
Q  141 gctttaacttcgtcct 156  Q
    |||| ||||| |||||    
T  891135 gcttcaacttggtcct 891120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 8740717 - 8740681
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||||||||||||||||||||||||||    
T  8740717 ttatatgcaggggctgaggttcgaactccggacaccc 8740681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 28378846 - 28378882
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28378846 ttatatgcaggggctgaggttcgaaccccggacaccc 28378882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 7314762 - 7314803
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||||||||||| ||||||||||| ||||||||||    
T  7314762 cattattatatgcaggggccgaggttcgaaccccggacaccc 7314803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 14012641 - 14012682
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    ||||||||||||||||||| | |||||||| |||||||||||    
T  14012641 cattgttatatgcaggggccggggttcgaagtccggacaccc 14012682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 44444581 - 44444617
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  44444581 ttatatgcaggggctggggttcgaaccccggacaccc 44444617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 40300384 - 40300320
Alignment:
Q  80 ctattctcttctgttaatgtctcacaacatctcttcaaatactcacaatccacttctgtttgctt 144  Q
    |||||||||||||||||||| ||||||||| |||| |   |||||||||||||||||||||||||    
T  40300384 ctattctcttctgttaatgtttcacaacatttctttaggaactcacaatccacttctgtttgctt 40300320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 34773749 - 34773708
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  34773749 cattattatatgcaggggctgaggttcgaaccccggacaccc 34773708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 36045854 - 36045899
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacacc 264  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||    
T  36045854 acatgcattgttatatgcaggggttgagattcgaactccggacacc 36045899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 56531302 - 56531261
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  56531302 cattgttatatgcaggggccggggttcgaactccggacaccc 56531261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 18497416 - 18497459
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggaca 262  Q
    |||| |||||||||||||||||| || |||||||||||||||||    
T  18497416 acatgcattgttatatgcaggggttggggttcgaactccggaca 18497459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 20610763 - 20610806
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggaca 262  Q
    |||| ||||||||||||||||||| | |||||||||||||||||    
T  20610763 acatgcattgttatatgcaggggccggggttcgaactccggaca 20610806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 24680119 - 24680085
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacac 263  Q
    ||||||||||||||||||||||||||||| |||||    
T  24680119 ttatatgcaggggctgaggttcgaactccagacac 24680085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 49039516 - 49039470
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| ||||||||||||||||| ||| ||||||||| ||||||||||    
T  49039516 acatgcattgttatatgcagggactggggttcgaaccccggacaccc 49039470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 38657564 - 38657609
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacacc 264  Q
    |||| ||||||||||||||||| |||| |||||||||||| |||||    
T  38657564 acatgcattgttatatgcagggactgaagttcgaactccgaacacc 38657609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 41003237 - 41003197
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  41003237 cattgttatatgcaggggttgag-ttcgaactccggacaccc 41003197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 53815725 - 53815766
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||||||||||||| ||||||||| ||||||||||    
T  53815725 cattattatatgcaggggctggggttcgaaccccggacaccc 53815766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 3036088 - 3036052
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  3036088 ttatatgcaggggccgaggttcgaaccccggacaccc 3036052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 32760679 - 32760715
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    ||||||||||||| || ||||||||||||||||||||    
T  32760679 ttatatgcaggggttggggttcgaactccggacaccc 32760715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 2816925 - 2816963
Alignment:
Q  227 tgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  2816925 tgttatatgcaggggctgagattcgaactccggacaccc 2816963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 10455765 - 10455812
Alignment:
Q  218 aacatccattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    ||||| ||||||||||||||||||| | ||||||||| ||||||||||    
T  10455765 aacatgcattgttatatgcaggggccggggttcgaaccccggacaccc 10455812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 17751408 - 17751362
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||||||||||||| || ||||||||||| ||||||||||    
T  17751408 acatgcattgttatatgcaggagcagaggttcgaaccccggacaccc 17751362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 20858454 - 20858408
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||||||||||||||| || |||||||| |||||||||||    
T  20858454 acatgcattgttatatgcaggggttggggttcgaattccggacaccc 20858408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 42271079 - 42271038
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  42271079 cattgttatatgcaggggccggggttcgaactccggacaccc 42271038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 19137642 - 19137689
Alignment:
Q  218 aacatccattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    ||||| ||||||||||||||||||| ||||||||||| || |||||||    
T  19137642 aacatgcattgttatatgcaggggccgaggttcgaaccccagacaccc 19137689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 4045705 - 4045659
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| ||||||||||||||||||  |||||||||||| |||||||||    
T  4045705 acatgcattgttatatgcaggggtcgaggttcgaacttcggacaccc 4045659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 16874261 - 16874215
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| ||||||||||||||||||| |||||||||||  |||||||||    
T  16874261 acatgcattgttatatgcaggggccgaggttcgaaccgcggacaccc 16874215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 2903732 - 2903781
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacacccaac 268  Q
    |||| ||||||||||||||||||||| ||||| ||| ||||| |||||||    
T  2903732 acatacattgttatatgcaggggctggggttcaaaccccggatacccaac 2903781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 33206786 - 33206827
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||||||||||||| ||||||||| ||||||||||    
T  33206786 cattattatatgcaggggctggggttcgaaccccggacaccc 33206827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 4860198 - 4860234
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||||||||||||||| || |||||||    
T  4860198 ttatatgcaggggctgaggttcgaaccccagacaccc 4860234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 28550352 - 28550316
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||| || |||||||||||||||||||    
T  28550352 ttatatgcaggggccgaagttcgaactccggacaccc 28550316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 34898800 - 34898764
Alignment:
Q  229 ttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||||||||||||||||| || |||||||    
T  34898800 ttatatgcaggggctgaggttcgaaccccagacaccc 34898764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 962320 - 962358
Alignment:
Q  227 tgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  962320 tgttatatgcaggggttggggttcgaactccggacaccc 962358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 35813313 - 35813267
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||||||||||||||||| |||||||||| | ||||||||    
T  35813313 acatgcattgttatatgcaggggctcaggttcgaacccaggacaccc 35813267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 40384275 - 40384321
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||| |||||||||| ||||| ||||||||||||||||||||    
T  40384275 acatgcattattatatgcagcggctggggttcgaactccggacaccc 40384321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 4059158 - 4059101
Alignment:
Q  99 tctcacaacatctcttcaaatactcacaatccacttctgtttgctttaacttcgtcct 156  Q
    ||||||||||||| |||||| | |||||||| || ||||||||||| ||||| |||||    
T  4059158 tctcacaacatcttttcaaaaattcacaatctacctctgtttgcttcaacttagtcct 4059101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 25055 - 25096
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||||||||||||| ||||||||| ||||||||||    
T  25055 cattattatatgcaggggctggggttcgaaccccggacaccc 25096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 108427 - 108386
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||| |||||||||||||||||||||| ||| ||||||||||    
T  108427 cattattatatgcaggggctgaggttcaaaccccggacaccc 108386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 451441 - 451400
Alignment:
Q  224 cattgttatatgcaggggctgaggttcgaactccggacaccc 265  Q
    |||||||||||| |||||| | ||||||||||||||||||||    
T  451441 cattgttatatgtaggggccggggttcgaactccggacaccc 451400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 34104 - 34060
Alignment:
Q  219 acatccattgttatatgcaggggctgaggttcgaactccggacac 263  Q
    |||| ||||||||||||||||||| | |||||||| |||||||||    
T  34104 acatgcattgttatatgcaggggccggggttcgaattccggacac 34060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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