View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_19 (Length: 412)
Name: NF1911_low_19
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 9075796 - 9075597
Alignment:
| Q |
13 |
tattttgattctcaatttagttttttgggcaaaagaaatataaatctatttataggcatataaatctttttaacatcttattcattgttttctatgcagt |
112 |
Q |
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| T |
9075796 |
tattttgattctcaatttagttttttgggcaaaagaaatataaatctatttataggcatataaatctttttaacatcttattcattgttttgtatgcagt |
9075697 |
T |
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| Q |
113 |
tctacaaaatcttttcgtcagggttgcaagacatagtgtggaacactgacaaaaaataatgaagtattaaggtatctgagaggcctccaatcattgaaca |
212 |
Q |
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| T |
9075696 |
tctacaaaatcttttcatcagggttgcaagacatagtgtggaacactgacaaaaaataatgaagtattaaggtatctgagaggcctccaatcattgaaca |
9075597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 211 - 341
Target Start/End: Complemental strand, 9075573 - 9075443
Alignment:
| Q |
211 |
catgacagaatgaaggaaatgaagataattctgtcatggatccgggaaatacggaagtaagacgtagtgagtgtaggaagtttcctagtactaggctgaa |
310 |
Q |
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| T |
9075573 |
catgacagaatgaaggaaatgaagataattctgtcatggatccgggaaatacggaagtaagacgtagtgagtgtaggaagtttcctagtactaggctgaa |
9075474 |
T |
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| Q |
311 |
gggttataaggaatgagtgtagaatatttga |
341 |
Q |
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| T |
9075473 |
gggttataaggaatgagtgtagaatatttga |
9075443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 9084380 - 9084275
Alignment:
| Q |
83 |
taacatcttattcattgttttctatgcagttctacaaaatcttttcgtcagggttgcaagacatagtgtggaacactgacaaaaaataatgaagtattaa |
182 |
Q |
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| T |
9084380 |
taacatcttattcatcgatttatatgcagttctacaaaaccttttcatcagggttgcaagacatagtgtggaacactgacaaaaaataatgaagtattaa |
9084281 |
T |
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| Q |
183 |
ggtatc |
188 |
Q |
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|||||| |
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| T |
9084280 |
ggtatc |
9084275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 6415584 - 6415479
Alignment:
| Q |
83 |
taacatcttattcattgttttctatgcagttctacaaaatcttttcgtcagggttgcaagacatagtgtggaacactgacaaaaaataatgaagtattaa |
182 |
Q |
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||||||||||||||| | ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6415584 |
taacatcttattcatcgatttatatgcagttctacaaaaccttttcatcagggttgcaagacatagtgtggaacactgacaaaaaataatgaagtattaa |
6415485 |
T |
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| Q |
183 |
ggtatc |
188 |
Q |
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|||||| |
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| T |
6415484 |
ggtatc |
6415479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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