View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1911_low_20 (Length: 400)
Name: NF1911_low_20
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_20 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 5 - 400
Target Start/End: Original strand, 12512978 - 12513371
Alignment:
| Q |
5 |
aagtattattgccacttaccaatgatgattaaggagaatacttgcaaagttattgaatttatttagtgtattattatttttgttttaactaagtatcttt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12512978 |
aagtattattgccacttaccaatgatgattaaggagaatacttgcaaagttattgaatttatttagtgtattattatttttgatttaactaagtatct-- |
12513075 |
T |
|
| Q |
105 |
gtgtgtaattatagcttataattattcgaattaagtagaagtccacaagtaacaaaatgctcaagagtaaactttaacgcatttgtagagttgattttca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12513076 |
gtgtgtaattatagcttataattattcgaattaagtagaagtccacaagtaacaaaatgctcaagagtaaactttaacgcatttgtagagttgattttca |
12513175 |
T |
|
| Q |
205 |
actcgaaatgactggtttaggcagaagttcaacatcactagttaagtgtacttaatatgcctcaggcaaaccaatgtaaaccaatatggtgttcaaataa |
304 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12513176 |
actcgaagtgactggtttaggcagaagttcaacatcactagttaagtgtacttaatatgcctcaggcaaaccaatgtaaaccaatatggtgttcaaataa |
12513275 |
T |
|
| Q |
305 |
gttagatatttgggtgtcgtaaatatttagttcgaagtttgatcataggtcagagcactatgaaaaaacatacaatagtattgggtatttgaagtt |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12513276 |
gttagatatttgggtgtcataaatatttagttcgcagtttgatcataggtcagggcactatgaaaaaacatacaatagtattgggtatttgaagtt |
12513371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University