View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_21 (Length: 399)

Name: NF1911_low_21
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_21
NF1911_low_21
[»] chr2 (4 HSPs)
chr2 (17-242)||(7157675-7157900)
chr2 (295-351)||(7157618-7157674)
chr2 (240-271)||(13754182-13754213)
chr2 (241-269)||(14288658-14288686)
[»] chr8 (2 HSPs)
chr8 (272-302)||(31760002-31760032)
chr8 (240-268)||(8672724-8672752)
[»] chr6 (2 HSPs)
chr6 (301-343)||(13692625-13692667)
chr6 (240-269)||(12732404-12732433)
[»] chr5 (1 HSPs)
chr5 (240-269)||(6754158-6754187)
[»] chr7 (1 HSPs)
chr7 (239-271)||(42841850-42841882)
[»] chr3 (1 HSPs)
chr3 (301-337)||(31126481-31126517)
[»] chr1 (1 HSPs)
chr1 (241-269)||(8464237-8464265)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 7157900 - 7157675
Alignment:
Q  17 aaaagaaagaatgacgtggttgcacgactttgtgataagaatctgtgtctgagatcaagggaattgtaacctccaaggatgtggagtaaggtcacatttg 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7157900 aaaagaaagaatgatgtggttgcacgactttgtgataagaatctgtgtctgagatcaagggaattgtaacctccaaggatgtggagtaaggtcacatttg 7157801  T
Q  117 ggggaatagattacactagattttggtttacgtgtagtgaagtgagggaggttggtttatgtgtagtgtagttttctatgcgcataacttacatgttcat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7157800 ggggaatagattacactagattttggtttacgtgtagtgaagtgagggaggttggtttatgtgtagtgtagttttctatgcgcataacttacatgttcat 7157701  T
Q  217 cccaaaatcaacacactatgacttta 242  Q
    ||||||||||| ||||||||||||||    
T  7157700 cccaaaatcaagacactatgacttta 7157675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 7157674 - 7157618
Alignment:
Q  295 atttgctaaaaaatagcagataattgataagttagattatagcagatgaatttataa 351  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||    
T  7157674 atttgctaaaaaataacagatagttgataagttagattatagcggatgaatttataa 7157618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 271
Target Start/End: Complemental strand, 13754213 - 13754182
Alignment:
Q  240 ttactacttccgttcctttttaattgtcactt 271  Q
    ||||||||||||||||||||||||||||||||    
T  13754213 ttactacttccgttcctttttaattgtcactt 13754182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 14288686 - 14288658
Alignment:
Q  241 tactacttccgttcctttttaattgtcac 269  Q
    |||||||||||||||||||||||||||||    
T  14288686 tactacttccgttcctttttaattgtcac 14288658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 302
Target Start/End: Complemental strand, 31760032 - 31760002
Alignment:
Q  272 aattaaaaaggaacggagggagtatttgcta 302  Q
    |||||||||||||||||||||||||||||||    
T  31760032 aattaaaaaggaacggagggagtatttgcta 31760002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 268
Target Start/End: Complemental strand, 8672752 - 8672724
Alignment:
Q  240 ttactacttccgttcctttttaattgtca 268  Q
    |||||||||||||||||||||||||||||    
T  8672752 ttactacttccgttcctttttaattgtca 8672724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 13692667 - 13692625
Alignment:
Q  301 taaaaaatagcagataattgataagttagattatagcagatga 343  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||    
T  13692667 taaaaaatagcggataattgataagttagtttatagcggatga 13692625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 269
Target Start/End: Complemental strand, 12732433 - 12732404
Alignment:
Q  240 ttactacttccgttcctttttaattgtcac 269  Q
    ||||||||||||||||||||||||||||||    
T  12732433 ttactacttccgttcctttttaattgtcac 12732404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 269
Target Start/End: Original strand, 6754158 - 6754187
Alignment:
Q  240 ttactacttccgttcctttttaattgtcac 269  Q
    ||||||||||||||||||||||||||||||    
T  6754158 ttactacttccgttcctttttaattgtcac 6754187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 42841850 - 42841882
Alignment:
Q  239 tttactacttccgttcctttttaattgtcactt 271  Q
    |||||||| ||||||||||||||||||||||||    
T  42841850 tttactacatccgttcctttttaattgtcactt 42841882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 31126517 - 31126481
Alignment:
Q  301 taaaaaatagcagataattgataagttagattatagc 337  Q
    |||||||||||| |||||||||||||||| |||||||    
T  31126517 taaaaaatagcaaataattgataagttagcttatagc 31126481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 8464237 - 8464265
Alignment:
Q  241 tactacttccgttcctttttaattgtcac 269  Q
    |||||||||||||||||||||||||||||    
T  8464237 tactacttccgttcctttttaattgtcac 8464265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University