View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_22 (Length: 388)
Name: NF1911_low_22
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 46 - 378
Target Start/End: Complemental strand, 7915061 - 7914726
Alignment:
| Q |
46 |
acgatagacttagaaccgttgcaggtaggattcaaacaattgttggcgacatagctacacaaggggagaggtttatgtctctactgagctggagagaccc |
145 |
Q |
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| T |
7915061 |
acgatagacttagaaccgttgcaggtaggattcaaacaattgttggcgacatagctacacaaggggagaggtttatgtctctactgagctggagagaccc |
7914962 |
T |
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| Q |
146 |
tagaggaactacattgtttgtgttgtttagcctttgtgcagctgtgattttctatgcaacatcatttagagttgtggttttggtgacaggtttgtataat |
245 |
Q |
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| T |
7914961 |
tagaggaactacactgtttgtgttgtttagcctttgtgcagctgtgattttctatgcaacaccatttagagttgtggttttggtgacaggtttgtataat |
7914862 |
T |
|
| Q |
246 |
ttgagacatccaaagtttaggaacaaactaccttctgttccgagtaatttcttcaagaggctccctgctagaacagatagtttactgtaaatctgttgtt |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7914861 |
ttgagacatccaaagtttaggaacaaactaccttctgttccgagtaatttcttcaagaggctccctgctagaacagatagtttactgtaaatctgttgtt |
7914762 |
T |
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| Q |
346 |
ttacaaataat---aataccatttcaatgatctgtg |
378 |
Q |
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| T |
7914761 |
ttacaaataataataatatcatttcaatgatctgtg |
7914726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 48 - 378
Target Start/End: Original strand, 7834244 - 7834565
Alignment:
| Q |
48 |
gatagacttagaaccgttgcaggtaggattcaaacaattgttggcgacatagctacacaaggggagaggtttatgtctctactgagctggagagacccta |
147 |
Q |
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| T |
7834244 |
gataggctaagaactgttgcaggtaggattcaagcaattgttggtgacatagctatacaaggggagaggtttgtgtctctactgagctggagagacacta |
7834343 |
T |
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| Q |
148 |
gaggaactacattgtttgtgttgtttagcctttgtgcagctgtgattttctatgcaacatcatttagagttgtggttttggtgacaggtttgtataattt |
247 |
Q |
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| T |
7834344 |
gaggaactacactgtttatgttgtttagcctttgtgcagctgtgattttctatgcaacaccatttagagttgtggttttagtgacaggtttgtataattt |
7834443 |
T |
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| Q |
248 |
gagacatccaaagtttaggaacaaactaccttctgttccgagtaatttcttcaagaggctccctgctagaacagatagtttactgtaaatctgttgtttt |
347 |
Q |
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| T |
7834444 |
gagacatccaaagtttaggaacaaactaccttctgtatcgagtaat------aagaggctccctgttagaacagatagtttaccgtgaatc---tgtttt |
7834534 |
T |
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| Q |
348 |
acaaataataataccatttcaatgatctgtg |
378 |
Q |
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| T |
7834535 |
acaaataataatatcatttcagtgatctgtg |
7834565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 7880207 - 7880109
Alignment:
| Q |
160 |
tgtttgtgttgtttagcctttgtgcagctgtgattttctatgcaacatcatttagagttgtggttttggtgacaggtttgtataatttgagacatccaa |
258 |
Q |
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|||||||||||||||| ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7880207 |
tgtttgtgttgtttagtctttgtgaagttgtgattttctatgcaactccatttagagttgtggttttggtgacaggtttgtataatttaagacatccaa |
7880109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 220 - 342
Target Start/End: Complemental strand, 7832708 - 7832586
Alignment:
| Q |
220 |
tggttttggtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgttccgagtaatttcttcaagaggctccctgctagaac |
319 |
Q |
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|||||||||||||| |||||||| |||||| |||| | | |||||||||||||||||||||||| || |||||||||||||||| ||||||| ||||||| |
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| T |
7832708 |
tggttttggtgacaagtttgtatgatttgaaacatacgaggtttaggaacaaactaccttctgtaccaagtaatttcttcaagaagctcccttctagaac |
7832609 |
T |
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| Q |
320 |
agatagtttactgtaaatctgtt |
342 |
Q |
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||| || ||||||||||| |||| |
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| T |
7832608 |
agaaagcttactgtaaatttgtt |
7832586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 8415497 - 8415403
Alignment:
| Q |
48 |
gatagacttagaaccgttgcaggtaggattcaaacaattgttggcgacatagctacacaaggggagaggtttatgtctctactgagctggagaga |
142 |
Q |
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| T |
8415497 |
gataggcttagaagtgttgcgggaaggattcaaacggttgttggagacatagctacacaaggagagaggtttcattctctactgagctggagaga |
8415403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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