View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_24 (Length: 387)
Name: NF1911_low_24
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 46438921 - 46438567
Alignment:
| Q |
17 |
ttagatgatggatatgtgaaagtaggtactaataaaagggttttaatatcatcatgcnnnnnnnncctttatcgattagtaaattttatgatgaccaagt |
116 |
Q |
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| T |
46438921 |
ttagatgatggatatgtgaaagtaggtactaataaaagggttttaatatcatcatgcttttttttcctttatcgattagtaaattttaagatggccaagt |
46438822 |
T |
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| Q |
117 |
aaaatccgaaaatagattgcctaaatatattcttctgaaagaaagctnnnnnnntcatcatattcttctgaaatataaaatacattaccagggataggga |
216 |
Q |
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| T |
46438821 |
aaaatccgaaaatagattgcctaaatatattcttctgaaagaaagctaaaaaaatcatcatattcttctgaaatataaaatacagtaccagggataggga |
46438722 |
T |
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| Q |
217 |
ttatgtcatttccctgatgcagaagccaagctaatgctaattgagaaggagtgcatgcatgctttgaagccaagtcattgattcgttcatagaaaagctt |
316 |
Q |
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| T |
46438721 |
ttatgtcatttccctgatgcagaagccaagctaatgctaattgagaaggagtgcatgcatgctttgaagccaagtcattgattcgttcataaaaaagctt |
46438622 |
T |
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| Q |
317 |
gttcttttccaaattttctcctgtgaaccttggatgcatagcctgttacagaaat |
371 |
Q |
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| T |
46438621 |
gttcttttccaaattttctcctgtgaaccttggatgcatagcctgttacagaaat |
46438567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 202 - 370
Target Start/End: Complemental strand, 46433094 - 46432926
Alignment:
| Q |
202 |
taccagggatagggattatgtcatttccctgatgcagaagccaagctaatgctaattgagaaggagtgcatgcatgctttgaagccaagtcattgattcg |
301 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46433094 |
taccggggatagggattatgtcatttccctgatgcagaagccatgctaatgctaattgagaaggagtgcatgcatgctttgaagccaatacattgattct |
46432995 |
T |
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| Q |
302 |
ttcatagaaaagcttgttcttttccaaattttctcctgtgaaccttggatgcatagcctgttacagaaa |
370 |
Q |
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| T |
46432994 |
ttcatagattatcttgttcttttccagatttactccagtgaacctgggatgcatattctgttacagaaa |
46432926 |
T |
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