View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1911_low_26 (Length: 368)
Name: NF1911_low_26
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_26 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 23 - 358
Target Start/End: Complemental strand, 10299458 - 10299123
Alignment:
| Q |
23 |
cggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtca |
122 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10299458 |
cggtactcagaagcctttttgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtca |
10299359 |
T |
|
| Q |
123 |
atcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaagaacaagttat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10299358 |
atcaaaaaacacgaagacttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttat |
10299259 |
T |
|
| Q |
223 |
agatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaact |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10299258 |
agatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaact |
10299159 |
T |
|
| Q |
323 |
tatcattatctgttaaaactctagtatgcatctctg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299158 |
tatcattatctgttaaaactctagtatgcatctctg |
10299123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 23 - 358
Target Start/End: Complemental strand, 10319890 - 10319555
Alignment:
| Q |
23 |
cggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtca |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10319890 |
cggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtca |
10319791 |
T |
|
| Q |
123 |
atcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaagaacaagttat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
10319790 |
atcaaaaaacacgaagacttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttat |
10319691 |
T |
|
| Q |
223 |
agatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaact |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10319690 |
agatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaact |
10319591 |
T |
|
| Q |
323 |
tatcattatctgttaaaactctagtatgcatctctg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
10319590 |
gatcattatctgttaaaactctagtatgcatctctg |
10319555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 23 - 358
Target Start/End: Complemental strand, 10337006 - 10336671
Alignment:
| Q |
23 |
cggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtca |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10337006 |
cggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtca |
10336907 |
T |
|
| Q |
123 |
atcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaagaacaagttat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
10336906 |
atcaaaaaacacgaagacttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttat |
10336807 |
T |
|
| Q |
223 |
agatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaact |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10336806 |
agatatatacatacatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaact |
10336707 |
T |
|
| Q |
323 |
tatcattatctgttaaaactctagtatgcatctctg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
10336706 |
gatcattatctgttaaaactctagtatgcatctctg |
10336671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 340
Target Start/End: Complemental strand, 10338557 - 10338441
Alignment:
| Q |
224 |
gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt |
323 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| | ||| | |||||||||||| |||||||||||| |||| ||||||||| |||||| |
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|
| T |
10338557 |
gatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaactt |
10338458 |
T |
|
| Q |
324 |
atcattatctgttaaaa |
340 |
Q |
| |
|
|| | | |||||||||| |
|
|
| T |
10338457 |
attactctctgttaaaa |
10338441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 101 - 358
Target Start/End: Original strand, 35632616 - 35632876
Alignment:
| Q |
101 |
gtaaagactcaaatt-gtcgtcaatcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaa |
199 |
Q |
| |
|
||||||||||||||| ||| || || ||||||||| ||| ||||||||||||||| ||| | ||| ||| | ||||||| ||| ||||| || |||| |
|
|
| T |
35632616 |
gtaaagactcaaattcgtcatcgataaaaaaacac--agaattattttcattttcttaagactaaacaagcc--cgtgttttttcacaatacaaaaggaa |
35632711 |
T |
|
| Q |
200 |
aaatcaagaaaagaacaagttatagata------tatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatccca |
293 |
Q |
| |
|
||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |||| | |||||||||||| ||||| |
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|
| T |
35632712 |
aaaccaagaaaagaacaagtcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactccca |
35632811 |
T |
|
| Q |
294 |
aagtccatcagaagcaaatataataaacttatcattatctgttaaaactctagtatgcatctctg |
358 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
35632812 |
aagtccaacagacgcaaatataagaaacttatcattctctgttaaaactctagtaaacatctctg |
35632876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 358
Target Start/End: Original strand, 35629396 - 35629722
Alignment:
| Q |
25 |
gtactcagaagccttttcgcaattccctgcaaaatccaccacagaata--attaaattaaaagcctgcaaatataactgtaaagactcaaatt-gtcgtc |
121 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||| || ||| | ||||| ||||||| ||||| ||||| |||| |||||||||| ||| | |
|
|
| T |
35629396 |
gtactcacaagcctttttgcaattccctgcaaaatccaccaaagcatataactaaatcaaaagccagcaaacataacggtaatgactcaaattcgtcttt |
35629495 |
T |
|
| Q |
122 |
aat-caaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaagaacaagtt |
220 |
Q |
| |
|
|| |||||||||| || ||||||||||||||| ||||| | |||| ||| ||||| ||||||| ||||||||||| |||| |
|
|
| T |
35629496 |
gatgcaaaaaacacaaatacttattttcattttataaagactaaat-------------------caaaatgaaaggaaaaaccaagaaaagaaaaagtc |
35629576 |
T |
|
| Q |
221 |
ataga--------tatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaat |
312 |
Q |
| |
|
||||| ||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35629577 |
atagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat |
35629676 |
T |
|
| Q |
313 |
ataataaacttatcattatctgttaaaactctagtatgcatctctg |
358 |
Q |
| |
|
|||| |||||| ||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
35629677 |
ataagaaacttgtcactatatgttaaaactctagtacgcatctctg |
35629722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 185 - 356
Target Start/End: Original strand, 35635959 - 35636136
Alignment:
| Q |
185 |
tcaatatgaatggaaaaatcaagaaaagaacaagttataga------tatatacatacatttctaggattcttttgaacaatttcagcagcttttttatt |
278 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| |||| ||||| |||| ||||| |||||| | ||| ||||||||||||||| | |||| || ||| |
|
|
| T |
35635959 |
tcaaaatgaaaggaaaaataaagaaaagaaaaagtcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatt |
35636058 |
T |
|
| Q |
279 |
tgacaagaaatcccaaagtccatcagaagcaaatataataaacttatcattatctgttaaaactctagtatgcatctc |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||||| |||||| | ||||||| |
|
|
| T |
35636059 |
tgacaagaaatcccaaagtccatcagaagcaaatatcagaaacttatcgttctctgttaaatctctagaacgcatctc |
35636136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 35635816 - 35635906
Alignment:
| Q |
25 |
gtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt |
115 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||| ||||| || |||| ||||| ||||||| ||||| ||||| |||| |||||||||| |
|
|
| T |
35635816 |
gtactcacaagcctttttgcaattccctgaaaaaatcaccatagcataactaaatcaaaagccagcaaacataacagtaatgactcaaatt |
35635906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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