View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_27 (Length: 353)

Name: NF1911_low_27
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_27
NF1911_low_27
[»] chr5 (1 HSPs)
chr5 (18-341)||(5179842-5180165)
[»] chr2 (2 HSPs)
chr2 (292-341)||(9747068-9747117)
chr2 (292-341)||(36770427-36770476)
[»] chr7 (1 HSPs)
chr7 (293-341)||(706512-706560)
[»] chr4 (4 HSPs)
chr4 (303-341)||(44775880-44775918)
chr4 (139-187)||(40188015-40188063)
chr4 (293-334)||(33471934-33471975)
chr4 (292-341)||(39317982-39318030)
[»] chr3 (3 HSPs)
chr3 (303-341)||(13481603-13481641)
chr3 (293-337)||(11776396-11776440)
chr3 (309-341)||(13528966-13528998)
[»] chr8 (1 HSPs)
chr8 (292-337)||(9264793-9264838)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 5179842 - 5180165
Alignment:
Q  18 ataaatggtgagtcagcgatagatttgtgtagggaacaaattaagcaaagcaagttagttaacaaaaagaatgtgttccagcaaggaatgctttgctagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5179842 ataaatggtgagtcagcgatagatttgtgtagggaacaaattaagcaaagcaagttagttaacaaaaagaatgtgttccagcaaggaatgctttgctagg 5179941  T
Q  118 ttttagtttatgcttttcattgggatctgtgtttgagaaagacattcccttttgctttattctacgctccctacttgcctttccttttttacctttcatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5179942 ttttagtttatgcttttcattgggatctgtgtttgagaaagacattcccttttgctttattctacgctccctacttgcctttccttttttacctttcatt 5180041  T
Q  218 tttggttcatgatatttaaactctatgctttgactacattttatctacttttaaatagtttaannnnnnnnnnggataaagttagaaaattgcaataaaa 317  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||           || |||| ||||||||||||||||||    
T  5180042 tttggttcatgatatttaaactctatactttgactatattttatctatttttaaatagtttaatttttttttttgacaaagctagaaaattgcaataaaa 5180141  T
Q  318 gaataaagggaaaagtacaatatt 341  Q
    ||||||||||||||||||||||||    
T  5180142 gaataaagggaaaagtacaatatt 5180165  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 9747117 - 9747068
Alignment:
Q  292 gataaagttagaaaattgcaataaaagaataaagggaaaagtacaatatt 341  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  9747117 gataaagctagaaaaatgcaataaaagaataaagggaaaagtacaatatt 9747068  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 36770476 - 36770427
Alignment:
Q  292 gataaagttagaaaattgcaataaaagaataaagggaaaagtacaatatt 341  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  36770476 gataaagctagaaaaatgcaataaacgaataaagggaaaagtacaatatt 36770427  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 706560 - 706512
Alignment:
Q  293 ataaagttagaaaattgcaataaaagaataaagggaaaagtacaatatt 341  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  706560 ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatatt 706512  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 44775918 - 44775880
Alignment:
Q  303 aaaattgcaataaaagaataaagggaaaagtacaatatt 341  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  44775918 aaaaatgcaataaaagaataaagggaaaagtacaatatt 44775880  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 40188063 - 40188015
Alignment:
Q  139 gggatctgtgtttgagaaagacattcccttttgctttattctacgctcc 187  Q
    |||||| |||| |||||||||| ||| ||||||||||||||||||||||    
T  40188063 gggatccgtgtatgagaaagaccttcacttttgctttattctacgctcc 40188015  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 33471975 - 33471934
Alignment:
Q  293 ataaagttagaaaattgcaataaaagaataaagggaaaagta 334  Q
    |||||| ||||||| ||||||||||||||||||| |||||||    
T  33471975 ataaagctagaaaaatgcaataaaagaataaaggaaaaagta 33471934  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 39318030 - 39317982
Alignment:
Q  292 gataaagttagaaaattgcaataaaagaataaagggaaaagtacaatatt 341  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||| ||||||    
T  39318030 gataaagctagaaaaatgcaataaaagaa-aaagggaaaagtataatatt 39317982  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 13481603 - 13481641
Alignment:
Q  303 aaaattgcaataaaagaataaagggaaaagtacaatatt 341  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  13481603 aaaaatgcaataaaagaataaagggaaaagtacaatatt 13481641  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 11776440 - 11776396
Alignment:
Q  293 ataaagttagaaaattgcaataaaagaataaagggaaaagtacaa 337  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||||    
T  11776440 ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaa 11776396  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 13528998 - 13528966
Alignment:
Q  309 gcaataaaagaataaagggaaaagtacaatatt 341  Q
    |||||||||||||||||||||||||||||||||    
T  13528998 gcaataaaagaataaagggaaaagtacaatatt 13528966  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 9264838 - 9264793
Alignment:
Q  292 gataaagttagaaaattgcaataaaagaataaagggaaaagtacaa 337  Q
    ||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  9264838 gataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaa 9264793  T

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