View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_28 (Length: 349)
Name: NF1911_low_28
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 66 - 332
Target Start/End: Original strand, 40646619 - 40646885
Alignment:
| Q |
66 |
taaacccacacgtgcaagtaccacaatcacacgtgcaaccaccaaaacaaaaacatcatcattttccgacaacccttcaacctcatacgccggttcaacc |
165 |
Q |
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| T |
40646619 |
taaacccacacgtgcaagtaccacaatcacacgtgcaaccaccaaaacaaaaacatcatcattttccgacaacccttcaacctcatacgccggttcaacc |
40646718 |
T |
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| Q |
166 |
ggattccatctctcaaccgatacatcaatctcaagcagaacatccttaacctctcttcgcaactcactcccagaaaacccaaacatctacgacttctccg |
265 |
Q |
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| T |
40646719 |
ggattccatctctcaaccgatacatcaatctcaagcagaacatccttaacctctcttcgcaactcactcccagaaaacccaaacatctacgacttctccg |
40646818 |
T |
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| Q |
266 |
aaatctgttccgccacaaacaacttcctctccaaacgctactcttcctcaacaccatgttggcgttg |
332 |
Q |
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| T |
40646819 |
aaatctgttccgccacaaataacttcctctccaaacgctactcttcctcaacaccatgctggcgttg |
40646885 |
T |
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