View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_29 (Length: 348)

Name: NF1911_low_29
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_29
NF1911_low_29
[»] chr6 (12 HSPs)
chr6 (16-298)||(20128188-20128470)
chr6 (16-298)||(22204400-22204682)
chr6 (42-348)||(24384638-24384945)
chr6 (16-299)||(18997276-18997553)
chr6 (16-299)||(20086480-20086757)
chr6 (41-189)||(20238497-20238645)
chr6 (41-189)||(22132481-22132629)
chr6 (53-292)||(21972368-21972601)
chr6 (42-150)||(20205943-20206051)
chr6 (42-150)||(22099966-22100074)
chr6 (227-292)||(20205807-20205872)
chr6 (227-292)||(22099830-22099895)
[»] scaffold0264 (1 HSPs)
scaffold0264 (16-298)||(16430-16706)
[»] scaffold0074 (1 HSPs)
scaffold0074 (16-292)||(47235-47505)
[»] scaffold0007 (1 HSPs)
scaffold0007 (38-299)||(4769-5015)
[»] chr1 (1 HSPs)
chr1 (224-285)||(47634876-47634937)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 20128470 - 20128188
Alignment:
Q  16 ctaccaaatcaataccaggacactcctctcttccttatcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaacccatct 115  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  20128470 ctaccaaatcaataccaggacactcctctcttctttatcatcaaaagccgtcggcaacaccgaattctacaacaccacagtcactagtataaacccctct 20128371  T
Q  116 gattctgtctatggattgttcatgtgcagaggtgatgtactctctcagttctgtcaaaaatgcatagttaatgcaacagcaaaactgtcctcagactcgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20128370 gattctgtctatggattgttcatgtgcagaggtgatgtactatctcagttctgtcaaaaatgcatagttaatgcaacagaaaaactgtcctcagactcgg 20128271  T
Q  216 attgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttccgctgtt 298  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||    
T  20128270 attgccatttatccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccactgtt 20128188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 22204400 - 22204682
Alignment:
Q  16 ctaccaaatcaataccaggacactcctctcttccttatcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaacccatct 115  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  22204400 ctaccaaatcaataccaggacactcctctcttctttatcatcaaaagccgtcggcaacaccgaattctacaacaccacagtcactagtataaacccctct 22204499  T
Q  116 gattctgtctatggattgttcatgtgcagaggtgatgtactctctcagttctgtcaaaaatgcatagttaatgcaacagcaaaactgtcctcagactcgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22204500 gattctgtctatggattgttcatgtgcagaggtgatgtactatctcagttctgtcaaaaatgcatagttaatgcaacagaaaaactgtcctcagactcgg 22204599  T
Q  216 attgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttccgctgtt 298  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||    
T  22204600 attgccatttatccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccactgtt 22204682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 42 - 348
Target Start/End: Original strand, 24384638 - 24384945
Alignment:
Q  42 tctcttccttatcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaaccc-atctgattctgtctatggattgttcatgt 140  Q
    ||||||| || |||||||||| |||| ||||||| ||||||||||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  24384638 tctcttctttgtcatcaaaagacgtcagcaacaccgaattctacaacacctcagtcattagtataaaccctatctgattttgtctatggattgttcatgt 24384737  T
Q  141 gcagaggtgatgtactctctcagttctgtcaaaaatgcatagttaatgcaacagcaaaactgtcctcagactcggattgccatttatccaaacgagctat 240  Q
    |||| |||||  |   ||||||  | |||||  |||||||||||||||||||   |||||||||||||||||| ||||||  ||| ||||||||||||||    
T  24384738 gcaggggtgacatttactctcaactttgtcatgaatgcatagttaatgcaactcaaaaactgtcctcagactcagattgctctttctccaaacgagctat 24384837  T
Q  241 catttggtacgatgagtgcatggttcgatactccaacaactctttcttttccgctgttgccatttatccttggctttacatgtggaacgtaggcaacgta 340  Q
    ||||||||| || ||||||||||||| |||||||||| | | |||||||||| ||||||| ||   |||| |||||||||||||||||| ||||||| ||    
T  24384838 catttggtatgaggagtgcatggttcaatactccaactattatttcttttccactgttgcaatacgtcctgggctttacatgtggaacgcaggcaacata 24384937  T
Q  341 tctaacac 348  Q
    ||||||||    
T  24384938 tctaacac 24384945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 18997553 - 18997276
Alignment:
Q  16 ctaccaaatcaataccaggacactcctctcttccttatcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaacccatct 115  Q
    ||||||||||||||||||||||||||||||||| || |||||| |||||  || |||||| |||||||||||||||||||||||  || |||| | | ||    
T  18997553 ctaccaaatcaataccaggacactcctctcttcattgtcatcagaagccaccgtcaacaccgaattctacaacaccacagtcaccggtgtaaatcgaact 18997454  T
Q  116 gattctgtctatggattgttcatgtgcagaggtgatgtactctctcagttctgtcaaaaatgcatagttaatgcaacagcaaaactgtcctcagactcgg 215  Q
    ||||||||||||||||||||||||||||| ||||| ||   ||||||  |||||    ||||||||||| |||||||   ||||||||||| |      |    
T  18997453 gattctgtctatggattgttcatgtgcaggggtgacgtctcctctcaaatctgtgttgaatgcatagttcatgcaactaaaaaactgtcctta------g 18997360  T
Q  216 attgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttccgctgttg 299  Q
    |||||| ||||||||||| |||  ||||||  ||||| ||||| |  ||||| |||||| |||||| |||||||||| ||||||    
T  18997359 attgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttactcctacaactatttcttttccactgttg 18997276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 20086757 - 20086480
Alignment:
Q  16 ctaccaaatcaataccaggacactcctctcttccttatcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaacccatct 115  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||  ||||||||| ||||||||||||||||||||||| |    | |||  |||    
T  20086757 ctaccaaatcaataccaggacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggagaccactct 20086658  T
Q  116 gattctgtctatggattgttcatgtgcagaggtgatgtactctctcagttctgtcaaaaatgcatagttaatgcaacagcaaaactgtcctcagactcgg 215  Q
     |||||||||||||||||||||||||||| ||||||||   || |||  ||||| |  |||||||||||||||||||   |||||| |||| |      |    
T  20086657 aattctgtctatggattgttcatgtgcaggggtgatgtcacctttcaaatctgtgatgaatgcatagttaatgcaactcaaaaactttcctta------g 20086564  T
Q  216 attgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttccgctgttg 299  Q
    ||||||  |||||||||| |||| | ||||  |||||  | ||||||||||||||||||| | | |||||||||||| ||||||    
T  20086563 attgcccattatccaaacaagctgtaatttattacgaaaattgcatggttcgatactccagcgagtctttcttttccactgttg 20086480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 20238645 - 20238497
Alignment:
Q  41 ctctcttccttatcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaacccatctgattctgtctatggattgttcatgt 140  Q
    |||||| |||| |||||||||||| | | |||||| ||||||||||||||||||||||||||| |||| ||  |||||||||||||||||||||||||||    
T  20238645 ctctctaccttgtcatcaaaagccatagacaacactgaattctacaacaccacagtcactagtgtaaatcccactgattctgtctatggattgttcatgt 20238546  T
Q  141 gcagaggtgatgtactctctcagttctgtcaaaaatgcatagttaatgc 189  Q
    |||| ||||| ||   ||||||  |||||||  ||||| ||||||||||    
T  20238545 gcaggggtgacgtctactctcaactctgtcatgaatgcgtagttaatgc 20238497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 22132629 - 22132481
Alignment:
Q  41 ctctcttccttatcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaacccatctgattctgtctatggattgttcatgt 140  Q
    |||||| |||| |||||||||||| | | |||||| ||||||||||||||||||||||||||| |||| ||  |||||||||||||||||||||||||||    
T  22132629 ctctctaccttgtcatcaaaagccatagacaacactgaattctacaacaccacagtcactagtgtaaatcccactgattctgtctatggattgttcatgt 22132530  T
Q  141 gcagaggtgatgtactctctcagttctgtcaaaaatgcatagttaatgc 189  Q
    |||| ||||| ||   ||||||  |||||||  ||||| ||||||||||    
T  22132529 gcaggggtgacgtctactctcaactctgtcatgaatgcgtagttaatgc 22132481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 292
Target Start/End: Complemental strand, 21972601 - 21972368
Alignment:
Q  53 tcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaacccatctgattctgtctatggattgttcatgtgcagaggtgatg 152  Q
    |||||||||||| | ||||||||  |||||||||||||||||||||||||||||||  | || |  || |||||||||||||||||||| ||||||||      
T  21972601 tcatcaaaagccataggcaacaccaaattctacaacaccacagtcactagtataaattcgtccgtatccgtctatggattgttcatgtgtagaggtgaca 21972502  T
Q  153 tactctctcagttctgtcaaaaatgcatagttaatgcaacagcaaaactgtcctcagactcggattgccatttatccaaacgagctatcatttggtacga 252  Q
    ||| ||||||  | |||||  | ||||||||||| |||||     | || ||||||      || |||  ||| ||||||| |||| | ||||||||||     
T  21972501 taccctctcatctatgtcatgactgcatagttaaggcaaccaatcagctatcctca------gagtgctctttgtccaaacaagctgtgatttggtacgg 21972408  T
Q  253 tgagtgcatggttcgatactccaacaactctttcttttcc 292  Q
     |||||||||||||||| |||  |||||||||||||||||    
T  21972407 cgagtgcatggttcgattctctgacaactctttcttttcc 21972368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 20206051 - 20205943
Alignment:
Q  42 tctcttccttatcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaacccatctgattctgtctatggattgttcatgtg 141  Q
    ||||||| || ||||||||||||   || |||||  |||||||||||   ||||||||||||||||| || ||||| || |||||||||| |||||||||    
T  20206051 tctcttcattgtcatcaaaagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtctatggatcgttcatgtg 20205952  T
Q  142 cagaggtga 150  Q
     ||||||||    
T  20205951 tagaggtga 20205943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 22100074 - 22099966
Alignment:
Q  42 tctcttccttatcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaacccatctgattctgtctatggattgttcatgtg 141  Q
    ||||||| || ||||||||||||   || |||||  |||||||||||   ||||||||||||||||| || ||||| || |||||||||| |||||||||    
T  22100074 tctcttcattgtcatcaaaagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtctatggatcgttcatgtg 22099975  T
Q  142 cagaggtga 150  Q
     ||||||||    
T  22099974 tagaggtga 22099966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 20205872 - 20205807
Alignment:
Q  227 tccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttcc 292  Q
    ||||||| |||| | ||||||||||  |||||||||||||||||||| ||||  ||||||||||||    
T  20205872 tccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttcc 20205807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 22099895 - 22099830
Alignment:
Q  227 tccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttcc 292  Q
    ||||||| |||| | ||||||||||  |||||||||||||||||||| ||||  ||||||||||||    
T  22099895 tccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttcc 22099830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 16706 - 16430
Alignment:
Q  16 ctaccaaatcaataccaggacactcctctcttccttatcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaacccatct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    |||||| |||    
T  16706 ctaccaaatcaataccaggacactcctctcttccttatcatcaaaagccgtcggcaacaccgaattctacaacaccacagtcaccacaggaaacccctct 16607  T
Q  116 gattctgtctatggattgttcatgtgcagaggtgatgtactctctcagttctgtcaaaaatgcatagttaatgcaacagcaaaactgtcctcagactcgg 215  Q
    ||||||||||||||||||||||||||||| ||||||||   || |||  ||||| |  |||||||||||||||||||   |||||| |||| |      |    
T  16606 gattctgtctatggattgttcatgtgcaggggtgatgtcacctttcaaatctgtgatgaatgcatagttaatgcaactcaaaaactttcctta------g 16513  T
Q  216 attgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttccgctgtt 298  Q
    ||||||  |||||||||| |||| | ||||  |||||  | ||||||||||||||||||||  | |||||||||||| |||||    
T  16512 attgcccattatccaaacaagctgtaatttattacgaaaattgcatggttcgatactccaatgagtctttcttttccactgtt 16430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 47235 - 47505
Alignment:
Q  16 ctaccaaatcaataccaggacactcctctcttccttatcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaacccatct 115  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||  ||||||||| ||||||||||||||||||||||| |    |||||  |||    
T  47235 ctaccaaatcaataccaagacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggaaaccactct 47334  T
Q  116 gattctgtctatggattgttcatgtgcagaggtgatgtactctctcagttctgtcaaaaatgcatagttaatgcaacagcaaaactgtcctcagactcgg 215  Q
    ||||||||||||||||||||||||||||| ||||||||   || |||  | ||| |  ||||||||||||||||||    ||||| ||||| |      |    
T  47335 gattctgtctatggattgttcatgtgcaggggtgatgtctcctttcaaatatgtgatgaatgcatagttaatgcaattcaaaaaccgtcctta------g 47428  T
Q  216 attgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttcc 292  Q
    ||||||  |||||||||  |||||| |||||||| ||  | ||||||||||||||||||||  | ||||||||||||    
T  47429 attgcccattatccaaagaagctattatttggtatgacaattgcatggttcgatactccaatgagtctttcttttcc 47505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 38 - 299
Target Start/End: Original strand, 4769 - 5015
Alignment:
Q  38 ctcctctcttccttatcatcaaaagccgtcggcaacacagaattctacaacaccacagtcactagtataaacccatctgattctgtctatggattgttca 137  Q
    ||||| |||||||| ||||||||||||   |||||||| ||||||||||||| |||||          |||||| |||||||||||||||||||||||||    
T  4769 ctcctttcttccttgtcatcaaaagccacaggcaacaccgaattctacaacatcacagg---------aaacccctctgattctgtctatggattgttca 4859  T
Q  138 tgtgcagaggtgatgtactctctcagttctgtcaaaaatgcatagttaatgcaacagcaaaactgtcctcagactcggattgccatttatccaaacgagc 237  Q
    ||||||| ||||||||   || |||  ||||| |  |||||||||||||||||||   ||||||||||| |      |||||||  |||||||||| |||    
T  4860 tgtgcaggggtgatgtcacctttcaaatctgtgatgaatgcatagttaatgcaactcaaaaactgtcctta------gattgcccattatccaaacaagc 4953  T
Q  238 tatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttccgctgttg 299  Q
    | | ||||  |||||  | ||||||||||||||||||||  | |||||||||||| ||||||    
T  4954 tgtaatttattacgaaaattgcatggttcgatactccaatgagtctttcttttccactgttg 5015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 47634876 - 47634937
Alignment:
Q  224 ttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactcttt 285  Q
    |||||||||| |||| | || |||||||| ||||||||||||||||| ||||||| ||||||    
T  47634876 ttatccaaacaagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttt 47634937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University