View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1911_low_30 (Length: 342)
Name: NF1911_low_30
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 326
Target Start/End: Original strand, 10552439 - 10552752
Alignment:
| Q |
13 |
aaggtcatgtaaagagtagttgaagcaaagatgttagaaataaaatcaagggatatagatagcatttcaaagttgtatgaaattctcatgaaggatgcat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||| |
|
|
| T |
10552439 |
aaggtcatgtaaagagtagttgaagcaaagatgttagaaataaaatcaagggatatagatagcatttcaaagttttatgaaattctcatgaagaatacat |
10552538 |
T |
|
| Q |
113 |
ctatgatgaatgaaattgaactactggttcaaatgaatttaccgacattttcataggagaatccctaactgtaaagtacacagtgaataaaaccgcgtat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10552539 |
ctatgatgaatgaaattgaactactggttcaaatgaatttaccgacattttcataggagaatccccaactgtaaagtacacagtgaataaaaccgcgtat |
10552638 |
T |
|
| Q |
213 |
aataggagttaccatctagcctatgctatttatcctgagtgagccacaattgtcaatgccatctcaatgccacaagacaatcccaatcccaagaccattt |
312 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10552639 |
aataggacttactatctagcctatgctatttatcctgagtgagctacaattgtcaatgccatctcaatgccacaagacaatcccaatcgcaagaccattt |
10552738 |
T |
|
| Q |
313 |
gaacgacaagaatc |
326 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10552739 |
gaacgacaagaatc |
10552752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University