View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_31 (Length: 341)
Name: NF1911_low_31
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_31 |
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| [»] scaffold1407 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 15933115 - 15932793
Alignment:
| Q |
1 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaattgaaattcaattaaatagccacccaacaatataaactcacggcttgag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15933115 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggcttgag |
15933016 |
T |
|
| Q |
101 |
ttataacaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcgattgaa |
200 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15933015 |
ttatagcaaggtaggtagcaacatggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcaattgaa |
15932916 |
T |
|
| Q |
201 |
atagttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagcagtttctaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15932915 |
atagttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagcagtttctaaa |
15932816 |
T |
|
| Q |
301 |
taacacagtttctctctaaaaag |
323 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
15932815 |
taacacagtttctctctaaaaag |
15932793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 15941457 - 15941135
Alignment:
| Q |
1 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaattgaaattcaattaaatagccacccaacaatataaactcacggcttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15941457 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggcttgag |
15941358 |
T |
|
| Q |
101 |
ttataacaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcgattgaa |
200 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15941357 |
ttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaagttggaatgaaaaaggaatgatgaaaacaggaactagcaattgaa |
15941258 |
T |
|
| Q |
201 |
atagttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagcagtttctaaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15941257 |
atagttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagcagtttctaaa |
15941158 |
T |
|
| Q |
301 |
taacacagtttctctctaaaaag |
323 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
15941157 |
taacacagtttctctctaaaaag |
15941135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 11164553 - 11164224
Alignment:
| Q |
1 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaattgaaattcaattaaatagccacccaacaatataaactcacggcttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||| |
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| T |
11164553 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacacaacaatatagactcatggcttgag |
11164454 |
T |
|
| Q |
101 |
ttataacaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcgattgaa |
200 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11164453 |
ttaaagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagaaattgaa |
11164354 |
T |
|
| Q |
201 |
atagttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataag-------cagt |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11164353 |
atagttacttaattcaaaattgcaattaagaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagcaataatcagt |
11164254 |
T |
|
| Q |
294 |
ttctaaataacacagtttctctctaaaaag |
323 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
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| T |
11164253 |
ttctaaataacacaatttctctctaaaaag |
11164224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 34657547 - 34657257
Alignment:
| Q |
1 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaattgaaattcaattaaatagccacccaacaatataaactcacggcttgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
34657547 |
tgcagccaggaatttgaagaaatacacacagcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggcttgag |
34657448 |
T |
|
| Q |
101 |
ttataacaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcgattgaa |
200 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
34657447 |
ttaaagcaaggtaggtagcaacacggcaattggaaaatacggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagaaattgaa |
34657348 |
T |
|
| Q |
201 |
atagttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagca |
291 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34657347 |
atagtaacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagca |
34657257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 1239 - 1346
Alignment:
| Q |
216 |
aaaattgcaattaacaaaggttctgaaattgtaa-aattgtacgatagctaaacaaaagcttaaattacgataagcagtttctaaataacacagtttctc |
314 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
1239 |
aaaattgcaattcacaaaggttctgaagttgtaagaattgtatgatagctaaacaaaagcttgaattac-ataagcagtttctaaataacacagtttctc |
1337 |
T |
|
| Q |
315 |
tctaaaaag |
323 |
Q |
| |
|
||||||||| |
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|
| T |
1338 |
tctaaaaag |
1346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 32609 - 32501
Alignment:
| Q |
216 |
aaaattgcaattaacaaaggttctgaaattgtaaa-attgtacgatagctaaac--aaaagcttaaattacgataagcagttt-ctaaataacacagttt |
311 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||| ||||||||||||||||| |||||||| |||||| ||||||||||| ||||||| |||||||| |
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|
| T |
32609 |
aaaattgcaattcacaaagattctgaagttgtaaggattgtacgatagctaaaacaaaaagcttgaattac-ataagcagttttctaaatagcacagttt |
32511 |
T |
|
| Q |
312 |
ctctctaaaa |
321 |
Q |
| |
|
|||||||||| |
|
|
| T |
32510 |
ctctctaaaa |
32501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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