View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_32 (Length: 336)

Name: NF1911_low_32
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_32
NF1911_low_32
[»] chr3 (5 HSPs)
chr3 (1-194)||(54018925-54019119)
chr3 (202-313)||(54019096-54019207)
chr3 (183-281)||(35310401-35310499)
chr3 (173-274)||(20991558-20991659)
chr3 (127-208)||(40355934-40356015)
[»] chr1 (7 HSPs)
chr1 (127-272)||(27541176-27541320)
chr1 (151-282)||(21322508-21322639)
chr1 (172-258)||(622902-622988)
chr1 (215-273)||(10369470-10369528)
chr1 (172-285)||(32815796-32815909)
chr1 (234-291)||(32827713-32827770)
chr1 (128-209)||(48729062-48729143)
[»] chr6 (3 HSPs)
chr6 (151-281)||(3644732-3644862)
chr6 (214-284)||(2725846-2725916)
chr6 (172-274)||(3607011-3607112)
[»] chr4 (7 HSPs)
chr4 (127-273)||(42747086-42747231)
chr4 (127-281)||(33648198-33648352)
chr4 (150-258)||(1845845-1845953)
chr4 (219-283)||(24393606-24393670)
chr4 (166-258)||(53979036-53979128)
chr4 (184-257)||(56210954-56211026)
chr4 (151-259)||(684167-684275)
[»] chr5 (3 HSPs)
chr5 (182-274)||(32303614-32303706)
chr5 (127-224)||(28217981-28218078)
chr5 (127-224)||(28228863-28228960)
[»] chr8 (5 HSPs)
chr8 (203-257)||(7913312-7913366)
chr8 (172-271)||(43846259-43846358)
chr8 (150-281)||(38006489-38006626)
chr8 (141-194)||(7913344-7913397)
chr8 (127-223)||(8983747-8983842)
[»] chr2 (1 HSPs)
chr2 (183-258)||(6620025-6620100)
[»] chr7 (1 HSPs)
chr7 (139-281)||(48967659-48967805)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 54018925 - 54019119
Alignment:
Q  1 ggaggcttttgagaaaataagggaggagaaattttctaaaatctaaggataaaaaggatcaaaacatcaatcagtttgagtattgggcctatgtattggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  54018925 ggaggcttttgagaaaataagggaggagaaattttctaaaatctaaggataaaaaggatcaaaacatcaatcagtttgagtattgggcttatgtattggc 54019024  T
Q  101 tgagaccgtttgagagctttgataccgagaattgctcgttttccatcta-tttttgctcattttcgttgaggaatacacctgtgtgagttaactc 194  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  54019025 tgagaccgtttgagagctttgatacagagaattgctatttttccatctatttttttctcattctcgttgaggaatacacctgtgtgagttaactc 54019119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 202 - 313
Target Start/End: Original strand, 54019096 - 54019207
Alignment:
Q  202 gaatacacatgtgtgagttaacttaagcttaactattttgacggaaatgagcaaaaattgatggtagaagagcggtactctttaatctatttaattatca 301  Q
    |||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  54019096 gaatacacctgtgtgagttaactcacgcttaactattttgacgaaaatgagcaaaaactgatggtaaaagtgcggtactctttaatctatttaattatca 54019195  T
Q  302 agacaaatgaca 313  Q
    ||||||||||||    
T  54019196 agacaaatgaca 54019207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 35310401 - 35310499
Alignment:
Q  183 gtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatgagcaaaaattgatggtagaagagcggtactc 281  Q
    |||||||||||| |||||||||||||| |||||||||||||| | |||   ||||||||||||  |||||||||||| ||||| ||| |||||||||||    
T  35310401 gtgagttaactcacactgagaatacacctgtgtgagttaactcacgctcggctattttgacggggatgagcaaaaatagatgggagatgagcggtactc 35310499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 274
Target Start/End: Complemental strand, 20991659 - 20991558
Alignment:
Q  173 atacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatgagcaaaaattgatggtagaaga 272  Q
    ||||| ||| |||||||||||| | |||| ||||||| |||||| ||||||| | |||   |||||||||||| ||||||||||| | ||||| ||||||    
T  20991659 atacatctgcgtgagttaactcacgctgacaatacacctgtgtgggttaactcacgctcggctattttgacgggaatgagcaaaattagatgggagaaga 20991560  T
Q  273 gc 274  Q
    ||    
T  20991559 gc 20991558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 40356015 - 40355934
Alignment:
Q  127 gagaattgctcgttttccatctatttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaataca 208  Q
    ||||||||||| | ||||||||  |||||||| |||||||| || |||||| ||| ||| |||||||| | |||| ||||||    
T  40356015 gagaattgctcttcttccatctgcttttgctcgttttcgttaagaaatacatctgcgtgggttaactcacgctgaaaataca 40355934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 127 - 272
Target Start/End: Complemental strand, 27541320 - 27541176
Alignment:
Q  127 gagaattgctcgttttccatctatttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaactta 226  Q
    |||||||| || | |||||||| ||||||||||| ||||||||| ||||||||| | ||||||||| | | |||||||||||| ||||||| ||||||||    
T  27541320 gagaattgttcttcttccatctgtttttgctcatcttcgttgagaaatacacct-tatgagttaacccacgctgagaatacacgtgtgtgacttaactta 27541222  T
Q  227 agcttaactattttgacggaaatgagcaaaaattgatggtagaaga 272  Q
     ||||   |||||| ||||||||| |||||||  ||||| ||||||    
T  27541221 cgcttgggtattttaacggaaatgggcaaaaacagatgggagaaga 27541176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 282
Target Start/End: Original strand, 21322508 - 21322639
Alignment:
Q  151 ttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatg 250  Q
    |||||||||||  ||||||| |||||| ||| |||||||||||  |  ||||||||||| || ||||||||||| |  ||   |||||||||||| | ||    
T  21322508 ttttgctcattcccgttgagaaatacatctgcgtgagttaacttacgttgagaatacacctgcgtgagttaactcaccctcggctattttgacgggattg 21322607  T
Q  251 agcaaaaattgatggtagaagagcggtactct 282  Q
    ||||||||  ||||| |||||||| |||||||    
T  21322608 agcaaaaacagatgggagaagagcagtactct 21322639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 622902 - 622988
Alignment:
Q  172 aatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatgagcaaaaa 258  Q
    |||||||||  |||||||||||| | |||| |||||||||| | ||||||||| | ||| | ||||||||||||  || ||||||||    
T  622902 aatacacctacgtgagttaactcacgctgaaaatacacatgcgcgagttaactcaggctcagctattttgacggggataagcaaaaa 622988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 10369528 - 10369470
Alignment:
Q  215 tgagttaacttaagcttaactattttgacggaaatgagcaaaaattgatggtagaagag 273  Q
    |||||||||| | ||| ||| |||||||||||||||||||||| ||||||  |||||||    
T  10369528 tgagttaactcacgctcaaccattttgacggaaatgagcaaaatttgatgaaagaagag 10369470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 285
Target Start/End: Original strand, 32815796 - 32815909
Alignment:
Q  172 aatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatgagcaaaaattgatggtagaag 271  Q
    ||||||| || |||||||||||| |   ||||||||| ||| |||||||| || |  ||  | ||||||||| ||||||||||||||  ||||| |||||    
T  32815796 aatacacatgcgtgagttaactcacgtcgagaatacatatgcgtgagttagctcacactagattattttgacagaaatgagcaaaaacagatggaagaag 32815895  T
Q  272 agcggtactcttta 285  Q
     | |||||||||||    
T  32815896 ggtggtactcttta 32815909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 32827770 - 32827713
Alignment:
Q  234 ctattttgacggaaatgagcaaaaattgatggtagaagagcggtactctttaatctat 291  Q
    |||||||||| | ||||||||||||  ||||| |||||||| |||||||||| |||||    
T  32827770 ctattttgacaggaatgagcaaaaacagatgggagaagagcagtactctttactctat 32827713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 48729143 - 48729062
Alignment:
Q  128 agaattgctcgttttccatctatttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacac 209  Q
    ||||||| || | |||||||||||||||||||||| |  |||  ||||||| || |||||||||||| | |||| |||||||    
T  48729143 agaattgttcttcttccatctatttttgctcatttccactgaaaaatacacatgcgtgagttaactcacgctgaaaatacac 48729062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 3644862 - 3644732
Alignment:
Q  151 ttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatg 250  Q
    |||||||||||| || |||| |||| || ||||| ||||||||| |||||| ||||||| ||  | |||||||| | |||||||||||||||||  ||||    
T  3644862 ttttgctcatttccgctgagaaatagacatgtgtaagttaactcacactgaaaatacacctgcataagttaactcacgcttaactattttgacgagaatg 3644763  T
Q  251 agcaaaaattgatggtagaagagcggtactc 281  Q
    ||||||||| ||||  |||||||| ||||||    
T  3644762 agcaaaaatagatgagagaagagcagtactc 3644732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 2725846 - 2725916
Alignment:
Q  214 gtgagttaacttaagcttaactattttgacggaaatgagcaaaaattgatggtagaagagcggtactcttt 284  Q
    ||||||||||| | |||   |||||||||||| ||||||||||||  ||||| |||||||| |||||||||    
T  2725846 gtgagttaactcacgctcggctattttgacgggaatgagcaaaaacagatgggagaagagcagtactcttt 2725916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 274
Target Start/End: Original strand, 3607011 - 3607112
Alignment:
Q  172 aatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatgagcaaaaattgatggtagaag 271  Q
    |||||||||  |||||||||||| |  | | |||||||||| |||||| || | | ||| ||||||||| ||| |||||||||||||| ||||| |||||    
T  3607011 aatacacctacgtgagttaactcacgttaaaaatacacatgcgtgagtcaattcacgctcaactatttt-acgaaaatgagcaaaaatagatgggagaag 3607109  T
Q  272 agc 274  Q
    |||    
T  3607110 agc 3607112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 127 - 273
Target Start/End: Complemental strand, 42747231 - 42747086
Alignment:
Q  127 gagaattgctcgttttccatctatttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaactta 226  Q
    ||||||||||| | | ||||||  ||||||||| ||||| |||| ||||||| || |||||||||||| | |||||||||||| || ||||||||||  |    
T  42747231 gagaattgctcttctcccatctggttttgctcactttcgctgagaaatacacatgcgtgagttaactcacgctgagaatacacctgcgtgagttaac-ga 42747133  T
Q  227 agcttaactattttgacggaaatgagcaaaaattgatggtagaagag 273  Q
     |||  ||||||||||||| ||| ||||||||  ||||| |||||||    
T  42747132 cgctctactattttgacgggaattagcaaaaacagatggaagaagag 42747086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 281
Target Start/End: Complemental strand, 33648352 - 33648198
Alignment:
Q  127 gagaattgctcgttttccatctatttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaactta 226  Q
    ||||||||||| | | |||||||||||||||||||  || |||  ||||||| || |  ||||||||| | |||||||||||  || || |||||||| |    
T  33648352 gagaattgctcttctaccatctatttttgctcattgccgctgaaaaatacacatgcgcaagttaactcacgctgagaatacatctgcgttagttaactca 33648253  T
Q  227 agcttaactattttgacggaaatgagcaaaaattgatggtagaagagcggtactc 281  Q
      ||  ||||||||||||| |||||||||||||  |||| |||||| ||||||||    
T  33648252 cactcgactattttgacgggaatgagcaaaaatatatgggagaagaacggtactc 33648198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 1845953 - 1845845
Alignment:
Q  150 tttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaat 249  Q
    ||||||||||||   | |||| ||||||| || ||||||||||||  ||| ||||||||||||  | |||||||| | |||| ||||| ||||||| |||    
T  1845953 tttttgctcattgctgctgagaaatacacatgcgtgagttaactcatactcagaatacacatgcataagttaactcacgcttgactatattgacgggaat 1845854  T
Q  250 gagcaaaaa 258  Q
    ||| |||||    
T  1845853 gagaaaaaa 1845845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 24393670 - 24393606
Alignment:
Q  219 ttaacttaagcttaactattttgacggaaatgagcaaaaattgatggtagaagagcggtactctt 283  Q
    |||||| | ||| ||||||||||| || ||||||||||||  ||||| |||||||||||||||||    
T  24393670 ttaactcacgctcaactattttgatgggaatgagcaaaaacagatgggagaagagcggtactctt 24393606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 53979128 - 53979036
Alignment:
Q  166 ttgaggaatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatgagcaaaaa 258  Q
    ||||| ||||||| ||  ||||||||||| | |||| |||||||||||||||||||||| | | |  |||||||| || | ||||||||||||    
T  53979128 ttgagaaatacacatgcttgagttaactcacgctgaaaatacacatgtgtgagttaactcacgttcgactattttaacaggaatgagcaaaaa 53979036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 56210954 - 56211026
Alignment:
Q  184 tgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatgagcaaaa 257  Q
    ||||||||||| |  ||| |||||||| ||||||||||||| | | | | ||||||||||||||||||||||||    
T  56210954 tgagttaactcacgttgaaaatacacacgtgtgagttaactcacg-tcagctattttgacggaaatgagcaaaa 56211026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 684167 - 684275
Alignment:
Q  151 ttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatg 250  Q
    ||||| ||||||  |||||| |||||| || |||||||||| || |  ||||||||||  || ||||||||||| | |||  |||||||| |||| ||||    
T  684167 ttttgttcatttctgttgagaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaacgggaatg 684266  T
Q  251 agcaaaaat 259  Q
    | |||||||    
T  684267 aacaaaaat 684275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 32303706 - 32303614
Alignment:
Q  182 tgtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatgagcaaaaattgatggtagaagagc 274  Q
    ||||||||||||| | |||| |||||||||| ||||||||||| | |||  |||||||||||| ||||||||||||   ||||| ||||||||    
T  32303706 tgtgagttaactcacgctgaaaatacacatgcgtgagttaactcacgctcgactattttgacgaaaatgagcaaaatcagatggaagaagagc 32303614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 28218078 - 28217981
Alignment:
Q  127 gagaattgctcgttttccatctatttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaact 224  Q
    ||||||||||| | |||||| | |||||||||||   ||||||| ||||||| || || ||||||||| |  ||||||||||| || |||||||||||    
T  28218078 gagaattgctcttcttccatatgtttttgctcatcaccgttgagaaatacacatgcgtaagttaactcacgatgagaatacacctgcgtgagttaact 28217981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 28228960 - 28228863
Alignment:
Q  127 gagaattgctcgttttccatctatttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaact 224  Q
    ||||||||||| | | |||||| |||||| |||| | || |||| ||||||| || || ||||||||| |  |||||||||||||| |||||||||||    
T  28228960 gagaattgctcttctcccatctgtttttgttcatctccgctgagaaatacacatgcgtaagttaactcacgatgagaatacacatgcgtgagttaact 28228863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 7913366 - 7913312
Alignment:
Q  203 aatacacatgtgtgagttaacttaagcttaactattttgacggaaatgagcaaaa 257  Q
    |||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||    
T  7913366 aatacacatgtgtgtgttaactcacgctcaactattttgacggaaatgagcaaaa 7913312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 43846358 - 43846259
Alignment:
Q  172 aatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatgagcaaaaattgatggtagaag 271  Q
    |||||||||| ||||||||||||   ||||||||| ||||| ||||||||||| | |||  |||||||| |||| | ||| ||||||  ||||| |||||    
T  43846358 aatacacctgcgtgagttaactcttgctgagaatatacatgcgtgagttaactcacgctcgactattttaacgggagtgaacaaaaacagatggaagaag 43846259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 38006489 - 38006626
Alignment:
Q  150 tttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagtta------acttaagcttaactattttgac 243  Q
    ||||||||||||  |  |||| |||||| ||| |||||||||||| | |||| |||||||||  ||||||||      ||| | |||  |||||||| ||    
T  38006489 tttttgctcattcccactgagaaatacatctgcgtgagttaactcaccctgaaaatacacatacgtgagttagcattaactcacgctcgactattttaac 38006588  T
Q  244 ggaaatgagcaaaaattgatggtagaagagcggtactc 281  Q
    || ||||||||||||  ||||| |||||||||||||||    
T  38006589 gggaatgagcaaaaacagatgggagaagagcggtactc 38006626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 7913397 - 7913344
Alignment:
Q  141 ttccatctatttttgctcattttcgttgaggaatacacctgtgtgagttaactc 194  Q
    |||||||| ||||||||||||| || |||| ||||||| |||||| ||||||||    
T  7913397 ttccatctgtttttgctcatttccgctgagaaatacacatgtgtgtgttaactc 7913344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 8983842 - 8983747
Alignment:
Q  127 gagaattgctcgttttccatctatttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacacatgtgtgagttaac 223  Q
    ||||||||||| || ||||||| ||||||||||||  || |||| ||||||  |  |||||||||||| | |||||||||||| | ||||| |||||    
T  8983842 gagaattgctc-ttctccatctctttttgctcattcccgctgagaaatacatttacgtgagttaactcacgctgagaatacacttatgtgaattaac 8983747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 6620100 - 6620025
Alignment:
Q  183 gtgagttaactcgcactgagaatacacatgtgtgagttaacttaagcttaactattttgacggaaatgagcaaaaa 258  Q
    ||||||||||||  || |||||||||| ||  |||||||||| | ||| |||||||||||||| ||||||||||||    
T  6620100 gtgagttaactcatacagagaatacacctgcatgagttaactcacgctcaactattttgacgggaatgagcaaaaa 6620025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 281
Target Start/End: Complemental strand, 48967805 - 48967659
Alignment:
Q  139 ttttccatctatttttgctcattttcgttgaggaatacacctgtgtgagttaactcgcactgagaatacaca----tgtgtgagttaacttaagcttaac 234  Q
    |||||||||| |||||| | |||| || |||| ||||||| |||||| ||| |||| | |||||||||||||    | ||||||||||||||  ||  ||    
T  48967805 ttttccatctgtttttgtttatttccgctgagaaatacacttgtgtgtgttgactcacgctgagaatacacacacttatgtgagttaacttaccctcgac 48967706  T
Q  235 tattttgacggaaatgagcaaaaattgatggtagaagagcggtactc 281  Q
     |||||||||| ||||| || |||  ||||| |||||||| ||||||    
T  48967705 aattttgacgggaatgaacataaacagatgggagaagagccgtactc 48967659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University