View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_34 (Length: 334)

Name: NF1911_low_34
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_34
NF1911_low_34
[»] chr1 (5 HSPs)
chr1 (18-299)||(47833734-47834015)
chr1 (62-227)||(25588693-25588857)
chr1 (58-239)||(2079034-2079212)
chr1 (221-291)||(21431113-21431181)
chr1 (61-124)||(26310395-26310456)
[»] chr5 (6 HSPs)
chr5 (18-265)||(33827456-33827703)
chr5 (62-253)||(33544889-33545082)
chr5 (97-178)||(11128878-11128959)
chr5 (96-281)||(34153983-34154165)
chr5 (77-222)||(17895633-17895778)
chr5 (105-243)||(798574-798714)
[»] chr2 (5 HSPs)
chr2 (18-254)||(27648323-27648557)
chr2 (62-265)||(44686131-44686334)
chr2 (18-253)||(36338863-36339097)
chr2 (62-252)||(26690565-26690754)
chr2 (149-253)||(6489861-6489964)
[»] chr3 (7 HSPs)
chr3 (18-234)||(53837457-53837673)
chr3 (18-234)||(53833859-53834075)
chr3 (62-234)||(24734262-24734434)
chr3 (139-202)||(3083790-3083853)
chr3 (127-229)||(16196740-16196842)
chr3 (62-122)||(7909524-7909582)
chr3 (162-227)||(7910335-7910400)
[»] chr6 (5 HSPs)
chr6 (18-253)||(352977-353212)
chr6 (72-234)||(12273581-12273741)
chr6 (62-257)||(14802747-14802945)
chr6 (66-164)||(31405638-31405736)
chr6 (173-216)||(31405733-31405776)
[»] chr8 (2 HSPs)
chr8 (64-249)||(15051490-15051673)
chr8 (76-227)||(24542657-24542808)
[»] chr4 (1 HSPs)
chr4 (37-253)||(54572844-54573047)
[»] chr7 (2 HSPs)
chr7 (76-242)||(38787055-38787219)
chr7 (148-216)||(4648282-4648350)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 47834015 - 47833734
Alignment:
Q  18 atcaaattaatagaactctaaatataatagaatagagaacaagtaaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttc 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||  ||||| ||||||||||||||||||    
T  47834015 atcaaattaatagatctctaaatataatagaatagagaacaagtaaacttatcgattattgactgaggcatgcatgaagcattgggcttaagagtatttc 47833916  T
Q  118 gccaccccggatgaatcatccgatgcgataggtctcataactaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaga 217  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||     
T  47833915 gccaccccggatgaatcatccgatgcaataggtctcatagctaatactctccagaatacaacagtcgcttcttgctagcaccgcacgtggattaacgagg 47833816  T
Q  218 tctcaggaaccacttatggatgctcatgggaacttataatttgttatttgttattagtgactaaataaaataagaaatgaaa 299  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47833815 tctcagaaaccacttatggatgctcatgggaacttataatttgttatttgttattagtgactaaataaaataagagatgaaa 47833734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 25588857 - 25588693
Alignment:
Q  62 aaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaa 161  Q
    |||||||| ||||||||||| ||| ||||||  || |||  ||||||||||||||||||||| || ||  || || |||| || ||| ||||||| |||     
T  25588857 aaacttatcgattattgactaaggtgtgcacatagtactttgcttaagagtatttcgccaccacgaatagattattcgatacggtagatctcatagctag 25588758  T
Q  162 tactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaac 227  Q
    |||||||||| |||| || ||| |||||||||||||||||||||| ||||||||| ||||| ||||    
T  25588757 tactctccagaatac-acggtcacttcttgctagcaccgcacgtgaattagcaaggtctcatgaac 25588693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 239
Target Start/End: Original strand, 2079034 - 2079212
Alignment:
Q  58 aagtaaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataa 157  Q
    ||||| |||||| |||| ||||||||||||||||  | | | ||| ||||||||||||| ||||||    ||| |||||  |||||| | |||||||||     
T  2079034 aagtagacttatcgatt-ttgactgaggcgtgcaaaatgaattggacttaagagtattttgccaccatatatggatcat--gatgcggttggtctcatag 2079130  T
Q  158 ctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaaccacttatggatg 239  Q
    |||||| ||||||||||||||||||| | |||| ||| ||||||||||  ||||||||| ||||| ||||||||| ||||||    
T  2079131 ctaatattctccaggatacaacagtcacgtcttactaacaccgcacgtaaattagcaaggtctcatgaaccacttttggatg 2079212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 21431113 - 21431181
Alignment:
Q  221 caggaaccacttatggatgctcatgggaacttataatttgttatttgttattagtgactaaat-aaaataag 291  Q
    |||||||||||  |||||||||||||||||||   | |||||||||| ||||||||||||||| ||||||||    
T  21431113 caggaaccactcttggatgctcatgggaactt---aattgttatttggtattagtgactaaatgaaaataag 21431181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 26310395 - 26310456
Alignment:
Q  61 taaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccc 124  Q
    ||||||||| |||||||||||||||| ||  | | ||||| ||||||||||||||| |||||||    
T  26310395 taaacttatcgattattgactgaggcttg--cgatgcactaggcttaagagtattttgccaccc 26310456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 33827703 - 33827456
Alignment:
Q  18 atcaaattaatagaactctaaatataatagaatagagaacaagtaaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |||||||||||||||||| |||||||||||||||||||||||     
T  33827703 atcaaattaatagaactctaaatataatagaatagagaacaagtaaatttatcggtcattgactgaggcgtgcacgaagcactgggcttaagagtatttt 33827604  T
Q  118 gccaccccggatgaatcatccgatgcgataggtctcataactaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaga 217  Q
    |||||||||||||||||| | ||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  33827603 gccaccccggatgaatcacctgatgcgataggtctcatagataatactctccaggatacaacaatcgcttcttgctagcaccgcacgtggattagcaagg 33827504  T
Q  218 tctcaggaaccacttatggatgctcatgggaacttataatttgttatt 265  Q
    ||||| ||| ||||||||||||||| |||||||||||||||| |||||    
T  33827503 tctcaagaatcacttatggatgctcttgggaacttataatttattatt 33827456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 253
Target Start/End: Original strand, 33544889 - 33545082
Alignment:
Q  62 aaacttattga-ttattgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataacta 160  Q
    ||||||||||| |||||||||||||| ||||  |  || || | |||||||||||| | ||||  ||||| |||| | |||| | | ||||||||| |||    
T  33544889 aaacttattgaattattgactgaggcatgcaaaatacaatgagtttaagagtatttaggcaccatggatggatcacctgatgtggttggtctcatagcta 33544988  T
Q  161 atactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaaccactt-atggatgctcatgggaactta 253  Q
     ||||||||| |||||| ||||| | ||||||||||| |||||||| ||||| || || |||||||| ||||  |||||||||| |||||||||    
T  33544989 gtactctccatgatacagcagtcacatcttgctagcatcgcacgtgaattagaaaaatatcaggaacaacttcttggatgctcaagggaactta 33545082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 11128878 - 11128959
Alignment:
Q  97 cactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaatactctccaggatacaa 178  Q
    |||||| ||||||||||||| |||||| |||||| ||||||||||||| | ||||||||| ||| || ||||||||||||||    
T  11128878 cactggacttaagagtattttgccaccacggatggatcatccgatgcggttggtctcatagctagtattctccaggatacaa 11128959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 281
Target Start/End: Original strand, 34153983 - 34154165
Alignment:
Q  96 gcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaatactctccaggatacaacagtcgcttcttgctag 195  Q
    |||||||||||||||| ||||||||||| | | | ||| | | |||||  | || |||| | ||| | |||||||||||||||||| | ||| |  |||     
T  34153983 gcactgggcttaagagcatttcgccaccacaggtcaatgacctgatgcagttggcctcaaagctagtgctctccaggatacaacagccacttttcactaa 34154082  T
Q  196 caccgcacgtggattagcaagatctcaggaaccacttatggatgctcatgggaacttataatttgttatttgttattagtgactaa 281  Q
    ||| ||||||| |  ||||||  | |||||||||||  |||||||||||||||||||   | |||||||||| |||||||||||||    
T  34154083 cactgcacgtgaaccagcaagggcacaggaaccactattggatgctcatgggaactt---aattgttatttggtattagtgactaa 34154165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 222
Target Start/End: Complemental strand, 17895778 - 17895633
Alignment:
Q  77 tgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaatactctccaggatac 176  Q
    ||||||||||  |||  ||||||| ||||||||||||||| ||| || ||||| | | ||||| |    | ||||||| | ||| |||||||||||||||    
T  17895778 tgactgaggctagcaaaaagcacttggcttaagagtattttgccgccacggattagttatccggtatagttggtctcacagctagtactctccaggatac 17895679  T
Q  177 aacagtcgcttcttgctagcaccgcacgtggattagcaagatctca 222  Q
    |||| || |||||||||| |||||||| || | ||||||| |||||    
T  17895678 aacaatcacttcttgctaacaccgcacatgaactagcaaggtctca 17895633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 798574 - 798714
Alignment:
Q  105 ttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaatact---ctccaggatacaacagtcgcttcttgctagcaccgc 201  Q
    |||||||||||| |||||| | |||| |||| || || || | ||||||||||||| ||||   ||||| |||| |||| || |||||| ||||||||||    
T  798574 ttaagagtattttgccaccacagatggatcacccaatacggttggtctcataactagtactttcctccatgatagaacaatcacttctt-ctagcaccgc 798672  T
Q  202 acgtggattagcaagatctcaggaaccacttatggatgctca 243  Q
    | ||| ||||||||| ||||   |||||||| ||||||||||    
T  798673 atgtgaattagcaaggtctcgaaaaccacttttggatgctca 798714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 27648557 - 27648323
Alignment:
Q  18 atcaaattaatagaactctaaatataatagaatagagaacaagtaaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttc 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| | |  ||| ||| ||||| ||||||||    
T  27648557 atcaaattaatagagctctaaatataatagaatagagaacaagtaaacttatcgattattgattgaggcgtggaat--gcattggacttaaaagtatttc 27648460  T
Q  118 gccaccccggatgaatcatccgatgcgataggtctcataactaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaga 217  Q
    ||||||  |||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||     
T  27648459 gccaccttggataaattatccgatgcgataggtctcatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacatggattaacaagg 27648360  T
Q  218 tctcaggaaccacttatggatgctcatgggaacttat 254  Q
    |||||  ||||||||||||||||||||||||||||||    
T  27648359 tctcaaaaaccacttatggatgctcatgggaacttat 27648323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 62 - 265
Target Start/End: Original strand, 44686131 - 44686334
Alignment:
Q  62 aaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaa 161  Q
    |||||| | |||||||||||||||| ||||  | |||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||| ||||    
T  44686131 aaacttctcgattattgactgaggcatgcaaaatgcactgggcttaagagtatttcgccacctcggataagttatccgatgcgataggtctcatagctaa 44686230  T
Q  162 tactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaaccacttatggatgctcatgggaacttataatttgt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  44686231 tactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaatcacttatggatgcttatgggaacttataatttgt 44686330  T
Q  262 tatt 265  Q
    ||||    
T  44686331 tatt 44686334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 36338863 - 36339097
Alignment:
Q  18 atcaaattaatagaactctaaatataatagaatagagaacaagtaaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttc 117  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||||| || ||||||||||||||||||| ||||||| || |||||||||||||    
T  36338863 atcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcgaatattgactgaggcgtgcacgaagcact-ggtttaagagtatttc 36338961  T
Q  118 gccaccccggatgaatcatccgatgcgataggtctcataactaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaga 217  Q
    |||| | || ||   | | |||||||  ||| |||| |  ||| ||||||||||||||||||||||  ||||||||||||||||| ||| ||||| |||     
T  36338962 gccatctcgaataggttacccgatgcagtagatctcgtggctagtactctccaggatacaacagtcagttcttgctagcaccgcatgtgaattagtaagg 36339061  T
Q  218 tctcaggaaccacttatggatgctcatgggaactta 253  Q
    |||||| |||||||| || |||||||||| ||||||    
T  36339062 tctcagaaaccacttttgaatgctcatggaaactta 36339097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 252
Target Start/End: Original strand, 26690565 - 26690754
Alignment:
Q  62 aaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaa 161  Q
    |||||||| ||||||||| ||||||||| | ||  || ||| |||||||||||||| |||||  ||||   | |||||||||  | ||||||||| |||     
T  26690565 aaacttatcgattattgaatgaggcgtgtaata--cattggacttaagagtatttcaccaccatggataggttatccgatgcagttggtctcatagctag 26690662  T
Q  162 tactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaaccactt-atggatgctcatgggaactt 252  Q
    ||||||| |  |||||||| ||  || |||||||||||  ||||| ||||| || |||| || ||| ||||  |||||||||| ||||||||    
T  26690663 tactctctataatacaacaatcattttttgctagcaccatacgtgaattagaaacatctaagaaacaacttgttggatgctcaagggaactt 26690754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 6489964 - 6489861
Alignment:
Q  149 gtctcataactaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaaccacttatggatgctcatggga 248  Q
    |||||| | ||| ||||||| |||||||||| ||| | | |||||||| |||||| || ||||||| | |||||  ||||| || ||||||||||||| |    
T  6489964 gtctcacagctagtactctcgaggatacaacggtcaccttttgctagcgccgcacatgaattagcagggtctcaa-aaccatttttggatgctcatggaa 6489866  T
Q  249 actta 253  Q
    |||||    
T  6489865 actta 6489861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 53837457 - 53837673
Alignment:
Q  18 atcaaattaatagaactctaaatataatagaatagagaacaagtaaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttc 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||  ||| | ||||||||||||||||||    
T  53837457 atcaaattaatagaactctaaacataatagaatagagaacaagtaaacttatcgattattgactgaggcgtgcatgaagtattgggcttaagagtatttc 53837556  T
Q  118 gccaccccggatgaatcatccgatgcgataggtctcataactaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaga 217  Q
    |||||| |||||||||||||||||||||||| |||||||  ||||||||| |||||||||||| || ||| ||||||||||||||  || |||||||||     
T  53837557 gccacctcggatgaatcatccgatgcgatagatctcatagttaatactctgcaggatacaacaatcactttttgctagcaccgcatatgaattagcaagg 53837656  T
Q  218 tctcaggaaccacttat 234  Q
    |||||| || |||||||    
T  53837657 tctcagaaatcacttat 53837673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 53833859 - 53834075
Alignment:
Q  18 atcaaattaatagaactctaaatataatagaatagagaacaagtaaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttc 117  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||  |||||||||||  |||||||||||| ||||||||||     
T  53833859 atcaaattaatagaactctaaatataatataatagagaacaactaaacttatcgattattggttgaggcgtgcatgaagcactgggctgaagagtatttt 53833958  T
Q  118 gccaccccggatgaatcatccgatgcgataggtctcataactaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaga 217  Q
    |||| ||||||| ||| | |||||||||||||||||||| |||||||||| |||||||||||| || |||||| ||||||||||| ||| |||||||||     
T  53833959 gccatcccggataaataacccgatgcgataggtctcatagctaatactctgcaggatacaacaatcacttcttcctagcaccgcatgtgaattagcaagg 53834058  T
Q  218 tctcaggaaccacttat 234  Q
    |||||||||||||||||    
T  53834059 tctcaggaaccacttat 53834075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 24734262 - 24734434
Alignment:
Q  62 aaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaa 161  Q
    ||||||||  |||||||||||||| |||||| |||||| |  |||||||||| ||||||||||| |||   | ||| |||||  ||||||||||| ||||    
T  24734262 aaacttatcaattattgactgaggtgtgcacgaagcaccgaacttaagagtacttcgccaccccagataggttatctgatgcagtaggtctcatagctaa 24734361  T
Q  162 tactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaaccacttat 234  Q
    |||||||||||||||||||||| | |||| ||||||||||| ||| ||||||||| |||||| ||| ||||||    
T  24734362 tactctccaggatacaacagtcacatcttactagcaccgcatgtgaattagcaaggtctcagaaacaacttat 24734434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 3083853 - 3083790
Alignment:
Q  139 gatgcgataggtctcataactaatactctccaggatacaacagtcgcttcttgctagcaccgca 202  Q
    |||||||||||||||||| |||||||||| ||| ||||| ||||| ||||||||||||||||||    
T  3083853 gatgcgataggtctcatagctaatactcttcagaatacagcagtcacttcttgctagcaccgca 3083790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 16196740 - 16196842
Alignment:
Q  127 gatgaatcatccgatgcgataggtctcataactaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaa 226  Q
    |||| ||||||||||||| | ||| ||||| ||| |||| |||| ||||||||| || |||||||||||||||||| ||| |||| |||| ||||| |||    
T  16196740 gatggatcatccgatgcggttggtttcatagctagtactttccatgatacaacaatcacttcttgctagcaccgcatgtgaattaacaaggtctcatgaa 16196839  T
Q  227 cca 229  Q
    |||    
T  16196840 cca 16196842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 7909524 - 7909582
Alignment:
Q  62 aaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttcgccac 122  Q
    ||||||||||||||||||||||||||||||  | ||| ||||||||||||||||| |||||    
T  7909524 aaacttattgattattgactgaggcgtgca--atgcattgggcttaagagtattttgccac 7909582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 7910335 - 7910400
Alignment:
Q  162 tactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaac 227  Q
    |||||| ||||||||||||||| |||||||||| ||||||| ||| | ||| ||| |||| |||||    
T  7910335 tactcttcaggatacaacagtcacttcttgctaacaccgcatgtgaaatagtaaggtctcgggaac 7910400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 353212 - 352977
Alignment:
Q  18 atcaaattaatagaactctaaatataatagaatagagaacaagtaaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttc 117  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||    
T  353212 atcaaattaatagaattctaaatacaatagaatagagaataagtaaactcatcgattattgactgaggcgtgcacgaagcactgggcttaagagtatttc 353113  T
Q  118 gccaccccggatgaatcatccgatgcgataggtctcataactaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaga 217  Q
    ||||||||| ||  || |||||||||||||||||||| | ||||||||||||||||||||| | || ||||||||||| | |||||||| |||||||||     
T  353112 gccaccccgaatagattatccgatgcgataggtctcacagctaatactctccaggatacaataatcacttcttgctagtatcgcacgtgaattagcaagg 353013  T
Q  218 tctcaggaaccacttatggatgctcatgggaactta 253  Q
    | |||  || ||||| ||||||||||  ||||||||    
T  353012 tgtcactaaacacttttggatgctcaaaggaactta 352977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 12273741 - 12273581
Alignment:
Q  72 attattgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaatactctccag 171  Q
    |||||||| ||||||||||| |  |||| |||||||||||||||| |||| |||||||| |||| || |||||||||||||||||  |||||||||  ||    
T  12273741 attattgattgaggcgtgcaat--gcaccgggcttaagagtattttgccatcccggatggatcacccaatgcgataggtctcatagttaatactctttag 12273644  T
Q  172 gatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaaccacttat 234  Q
    ||||||||| || ||||||||||||||| || ||| ||||||||| ||||| |||| ||||||    
T  12273643 gatacaacaatcacttcttgctagcaccacatgtgaattagcaaggtctcatgaacaacttat 12273581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 62 - 257
Target Start/End: Complemental strand, 14802945 - 14802747
Alignment:
Q  62 aaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtat----ttcgccaccccggatgaatcatccgatgcgataggtctcataa 157  Q
    |||||||| |||||||| ||||||| ||||| || ||||||| ||||||||||    || |||||| |  || | | || ||||||||||| ||| |||     
T  14802945 aaacttatcgattattggctgaggcatgcacaaaacactgggtttaagagtatatattttgccacctcaaataagttattcgatgcgatagatctgatag 14802846  T
Q  158 ctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaaccacttatggatgctcatgggaacttataat 257  Q
    |||||||||||||||||||||||  | |||||||||||||| ||||||| ||||||||| | ||||||| ||||| ||||||||||||| ||||||||||    
T  14802845 ctaatactctccaggatacaacaaccacttcttgctagcactgcacgtgaattagcaaggtttcaggaaacactt-tggatgctcatggaaacttataat 14802747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 31405638 - 31405736
Alignment:
Q  66 ttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaatac 164  Q
    |||| ||||||||| |||| ||||||  | ||| || |||||||||||||||||||| ||| ||  || |||||||||  ||||||||||| |||||||    
T  31405638 ttatcgattattgagtgagacgtgcaaaatgcattgagcttaagagtatttcgccactccgaatagattatccgatgcagtaggtctcatagctaatac 31405736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 31405733 - 31405776
Alignment:
Q  173 atacaacagtcgcttcttgctagcaccgcacgtggattagcaag 216  Q
    ||||||||||| |||||||||| ||||||||||| |||||||||    
T  31405733 atacaacagtcacttcttgctaacaccgcacgtgaattagcaag 31405776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 64 - 249
Target Start/End: Complemental strand, 15051673 - 15051490
Alignment:
Q  64 acttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaata 163  Q
    |||||| |||||||||||||| |||||| |  ||| |||| ||||||||||||||||| ||||||| | | |||||||||||||| ||||||| ||||||    
T  15051673 acttatcgattattgactgagacgtgcaat--gcattgggtttaagagtatttcgccatcccggataagttatccgatgcgatagatctcatagctaata 15051576  T
Q  164 ct-ctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaaccacttatggatgctcatgggaa 249  Q
    || |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||    
T  15051575 cttctccagaata-aacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcagaaaccacttatggatgctcaagggaa 15051490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 24542808 - 24542657
Alignment:
Q  76 ttgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaatactctccaggata 175  Q
    ||||||||||||||||  | ||| ||| ||||||||||||| ||||   |||||| ||||||||||||| | | ||||||| ||| |||||||||| |||    
T  24542808 ttgactgaggcgtgcaaaatgcattggacttaagagtattttgccattacggatggatcatccgatgcggttgatctcatagctagtactctccagaata 24542709  T
Q  176 caacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaac 227  Q
    ||||| ||   |||||||||||||||||||| ||||||||| ||||| ||||    
T  24542708 caacaatcatatcttgctagcaccgcacgtgaattagcaaggtctcatgaac 24542657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 37 - 253
Target Start/End: Complemental strand, 54573047 - 54572844
Alignment:
Q  37 aaatataatagaatagagaacaagtaaacttattgattattgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcat 136  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||| |                 
T  54573047 aaatacaatagaatagagaataagtaaacttatcgattattgactgaggcgtgcacgaagcactggacttaagagtatttcaccatc------------- 54572961  T
Q  137 ccgatgcgataggtctcataactaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaaccacttatgg 236  Q
     ||||||  ||||||||||| ||||||| ||||| ||||||| |||| | |||||||||||||||||||| |||| |||  |||||||||| |||  |||    
T  54572960 tcgatgcagtaggtctcatagctaataccctccaagatacaaaagtcacatcttgctagcaccgcacgtgaattaacaaagtctcaggaactactcttgg 54572861  T
Q  237 atgctcatgggaactta 253  Q
    |||||||||||||||||    
T  54572860 atgctcatgggaactta 54572844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 242
Target Start/End: Complemental strand, 38787219 - 38787055
Alignment:
Q  76 ttgactgaggcgtgcactaagcactgggcttaagagtatttcgccaccccggatgaatcatccgatgcgataggtctcataactaatactctccaggata 175  Q
    ||||||||||||||||  | ||||||| ||||||||||||||| ||||| ||||  || |||||||||  ||||||  |||  || ||||||||||||||    
T  38787219 ttgactgaggcgtgcaaaatgcactggacttaagagtatttcgtcaccctggattgattatccgatgcagtaggtc--atagttagtactctccaggata 38787122  T
Q  176 caacagtcgcttcttgctagcaccgcacgtggattagcaagatctcaggaaccacttatggatgctc 242  Q
    |||||||| | |||||||||||||||| ||| |||| |||  |||||| |||||||| | |||||||    
T  38787121 caacagtcacatcttgctagcaccgcatgtgaattaacaaagtctcagaaaccacttttagatgctc 38787055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 4648282 - 4648350
Alignment:
Q  148 ggtctcataactaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaag 216  Q
    ||||||||| ||| |||||| ||||||||||||||| |||||||||| ||| |||| || |||||||||    
T  4648282 ggtctcatagctagtactcttcaggatacaacagtcacttcttgctaacactgcacatgaattagcaag 4648350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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