View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_35 (Length: 333)
Name: NF1911_low_35
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 316
Target Start/End: Original strand, 52943831 - 52944137
Alignment:
| Q |
10 |
catcatcaaattatatagctaaattcattccactaattatcaaatagtgtaccttgtaccatttatgcatattattatggtaaagggaaatggcttggtc |
109 |
Q |
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| T |
52943831 |
catcatcaaattatatagctaaattcattccactaattatcaaatagtgtaccttgtatcatttatgcatattattatggtaaagggaaatgacttggtc |
52943930 |
T |
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| Q |
110 |
ttgatacctaattgtcttatgtactagtagttagtatattgtaggtttgagttccatttgtttttcaatgcatgtacgtgtagcaaaaccaattttcatc |
209 |
Q |
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| T |
52943931 |
ttgatacctaattgtcttatgtactagtagttagtatattgtaggtttgagttccatttgtttttcaatgcatgtacgtgtagcaaaaccaattttcatc |
52944030 |
T |
|
| Q |
210 |
tttatctcatgttactattaaactaatattaaatataatgaccgatccaagattgtagaaaagaaatagggtcatgtatttgaaaagaaaattttgaacc |
309 |
Q |
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| T |
52944031 |
tttatctcatgttactattaaactaatattaaatataatgaccgatccaaaattgtagaaaagaaatggggacatgtatttgaaaagaaaattttgatcc |
52944130 |
T |
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| Q |
310 |
aagtttt |
316 |
Q |
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| T |
52944131 |
aagtttt |
52944137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 78 - 248
Target Start/End: Original strand, 19330034 - 19330201
Alignment:
| Q |
78 |
atattattatggtaaagggaaatggcttggtcttgatacctaattgtcttatgtactagtagttagtatattgtaggtttgagttccatttgtttttcaa |
177 |
Q |
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| T |
19330034 |
atattactatggtaaatggaaatgacttgatgttgata--taattgtcttatgcactagtagttactatattgtaggtttgaggtccatttgtttttcaa |
19330131 |
T |
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| Q |
178 |
tgcatgtacgtgtagcaaaaccaattttcatctttatctcatgttactattaaactaatattaaatataat |
248 |
Q |
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| T |
19330132 |
tgcatgtacgtgtagcaaaatctctcttcatctttatctcatgttactattaagc-aaaattaaatataat |
19330201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 300
Target Start/End: Complemental strand, 48189233 - 48189140
Alignment:
| Q |
204 |
ttcatctttatctcatgttactattaaactaatattaaatataatgaccgatccaagattgtagaaaagaaatagggtcatgtatttgaaaagaaaa |
300 |
Q |
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| T |
48189233 |
ttcatctttatatcatgttgctattaaacta--attaattattttgagtgatccataattgtagaaaagaaatggggacatgtattt-aaaagaaaa |
48189140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 300
Target Start/End: Complemental strand, 21270356 - 21270263
Alignment:
| Q |
204 |
ttcatctttatctcatgttactattaaactaatattaaatataatgaccgatccaagattgtagaaaagaaatagggtcatgtatttgaaaagaaaa |
300 |
Q |
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| T |
21270356 |
ttcatctttatatcatgttgctattaaacta--attaattattttgagtgatccataattatagaaaagaaatggggacatgtattt-aaaagaaaa |
21270263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 299
Target Start/End: Original strand, 35918566 - 35918784
Alignment:
| Q |
80 |
attattatggtaaagggaaatggcttggtcttgatacctaattgtcttatgtact-agtagttagtatattgtaggtttgagttccatttgtttttcaat |
178 |
Q |
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||||||||| |||||||||||| ||||||||||||| ||||||||||||| ||| |||||||| ||||||||||| || |||||||||||||||||||| |
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| T |
35918566 |
attattatgctaaagggaaatgacttggtcttgata--taattgtcttatgcacttagtagttactatattgtaggattaagttccatttgtttttcaat |
35918663 |
T |
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| Q |
179 |
gcatgtacgtgt----agcaaaaccaattttcatctttatctcatgttactattaaactaatattaaatataatgaccgatccaagattgtagaaaagaa |
274 |
Q |
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| T |
35918664 |
gcatatacatgtagcaagcaaaaccacttttcatctttatct-atgtta-tattcgactaatat--aatataatgactggtccaatattgtagaaaagaa |
35918759 |
T |
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| Q |
275 |
atagggtcatgtatttgaaaagaaa |
299 |
Q |
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| T |
35918760 |
atggggacatgcaattgaaaagaaa |
35918784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 35917053 - 35917123
Alignment:
| Q |
10 |
catcatcaaattatatagctaaattcattccactaattatcaaatagtgtaccttgtaccatttatgcata |
80 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| |
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| T |
35917053 |
catcatcaaattatatagctaaattcattccactaattattaaatagtgtaccatgcaccatttatgcata |
35917123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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