View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_36 (Length: 328)
Name: NF1911_low_36
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 29681165 - 29680865
Alignment:
| Q |
18 |
atatatctcttgttttagcaatgtctgattcaaccaacaacaacattaacaccggtgcctctggtggtgcaggttcttcttcccggagaacagacaacac |
117 |
Q |
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||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29681165 |
atatatctcttgtttcaacaatgtctgattcaaacaacaacaacattaacaccggtgcctctggtggtgcaggttcttcttcccgaagaacagacaacac |
29681066 |
T |
|
| Q |
118 |
caaattccccaccatggataagatttttggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccacc |
217 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29681065 |
caaattccccacaatggataagattttcggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccacc |
29680966 |
T |
|
| Q |
218 |
atgcaagatgttttcggtccccgacggtaaggccgagacccttcagatccaatgactcgccatcttcaacttgaaccattatatttatatctacgtctgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
29680965 |
atgcaagatgttttcggtccccgacggtaaggccgagacccttcagatccaatgactcgccatcttcaacttgaaccattatatttatatttaggtctgt |
29680866 |
T |
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| Q |
318 |
g |
318 |
Q |
| |
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| |
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| T |
29680865 |
g |
29680865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 29667808 - 29667505
Alignment:
| Q |
18 |
atatatctcttgttttagcaatgtctgattcaaccaacaacaaca---ttaacaccggtgcctctggtggtgcaggttcttcttcccggagaacagacaa |
114 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29667808 |
atatatctcttgttttagcaatgtctgattcaaacaacaacaacaacattaacaccggtgcctctggtggtgcaggttcttcatcccggagaacagacaa |
29667709 |
T |
|
| Q |
115 |
caccaaattccccaccatggataagatttttggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttcccc |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29667708 |
caccaaattccccaccatggataagattttcggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttcccc |
29667609 |
T |
|
| Q |
215 |
accatgcaagatgttttcggtccccgacggtaaggccgagacccttcagatccaatgactcgccatcttcaacttgaaccattatatttatatctacgtc |
314 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29667608 |
accatgcaagatgttttcgctccccgacggtaaggccaagacccttcagatccaatgactcgccatcttcaacttgaaccattatatttatattcacgtc |
29667509 |
T |
|
| Q |
315 |
tgtg |
318 |
Q |
| |
|
|||| |
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|
| T |
29667508 |
tgtg |
29667505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 140 - 318
Target Start/End: Complemental strand, 29686842 - 29686665
Alignment:
| Q |
140 |
atttttggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccaccatgcaagatgttttcggtcccc |
239 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||||||||||||||||||||| || |
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| T |
29686842 |
attttcggtattaggccacctcctagagagagaaccggtgatgccaataacaacacgaacaaaaaaaagttccctaccatgcaagatgttttcggtcacc |
29686743 |
T |
|
| Q |
240 |
gacggtaaggccgagacccttcagatccaatga--ctcgccatcttcaacttgaaccattatatttatatctacgtctgtg |
318 |
Q |
| |
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| || ||||||| ||||| |||||||| || |||||||||||||||||| ||| ||||||||||||||| ||||||| |
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| T |
29686742 |
ggcgataaggccaagacc---aagatccaaggactctcgccatcttcaacttgcaccgttatatttatatctaggtctgtg |
29686665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 29690370 - 29690442
Alignment:
| Q |
141 |
tttttggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccc |
213 |
Q |
| |
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|||| |||| ||||||||| | ||||||||| || ||||||||||||||||| |||||||| || |||||||| |
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| T |
29690370 |
ttttcggtaataggccaccccgtagagagagcactggtgatgccaataacaaaaccaaaggtactaagttccc |
29690442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 29719085 - 29719146
Alignment:
| Q |
152 |
aggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccc |
213 |
Q |
| |
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|||||||| | ||||||||| || ||||||||||||||||| |||||||| || |||||||| |
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| T |
29719085 |
aggccaccccatagagagagcactggtgatgccaataacaaaaccaaaggtactaagttccc |
29719146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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