View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1911_low_39 (Length: 321)

Name: NF1911_low_39
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1911_low_39
NF1911_low_39
[»] chr4 (1 HSPs)
chr4 (19-311)||(47993666-47993956)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 47993666 - 47993956
Alignment:
Q  19 tagcttctctctaaaaacatccaaagtaattgtaaagatttggattagacacactaacaatgtcacatagtgattcgacttggtcgtcggatctggatca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  47993666 tagcttctctctaaaaacatccaaagtaattgtaaagatttggattagacacgctaacaatgtcacgtagtgattcgacttggtcgtcggatctggatca 47993765  T
Q  119 accgtcaaaattgattcatcgtctcaaactgtgtaatatgaattcataatccttaattaaaatttgagattgtttatggaaagaaacaagtgaaggtaag 218  Q
    || |||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||    
T  47993766 acagtcaaaattggttcattgtctgaaactgtgtaatatgaa-tcataatccttaattaaaatttgagattgtttatggtaagaaaaaggtgaacgtaag 47993864  T
Q  219 atgttttaatctcatccacttatttcattttttattgttaagattgggttatctctctatgcattatgattgggatatgcattttaccctatg 311  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47993865 atgttttaatctcatccacttatttcattttttattg-taagattgggttatctctctatgcattatgattgggatatgcattttactctatg 47993956  T

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