View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1911_low_4 (Length: 608)
Name: NF1911_low_4
Description: NF1911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1911_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Original strand, 5743371 - 5743947
Alignment:
| Q |
18 |
atgtaagccaactaagacgcgagtgtatgtgaaagaaaaccacttgagaggaagtaaacttgatgaataggtgaactcatacttgataggggaaatattg |
117 |
Q |
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| T |
5743371 |
atgtaagccaactaagacgcgagtgtatgtgaaagaaaaccacttgagaggaagtaaacttgatgaataggtgaactcatacttgataggggaaatattg |
5743470 |
T |
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| Q |
118 |
aagtgtcttatgtgagtaaaaagtttcacatacaatgaaacttaaggtgaaat---gtgttttaggtttctctcagaatccaacaatgatcacctttatt |
214 |
Q |
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| T |
5743471 |
aagtgtcttatgtgagtaagaagtttcacatacaatgaaacttaaggtgaaatgtagtgttttaggcttctctcacaatccaacaatgatcacctttatt |
5743570 |
T |
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| Q |
215 |
caataagatgtaggcgaaaactgtgtaaaccattgttaaatggtaagattatgagcacctatattgtcgtgtatatgtctatcatttatgtgtacgataa |
314 |
Q |
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| T |
5743571 |
caataagatgtaggcgaaaactgtgtaaaccattgttaaatggtaagattatgagcacctatattgtcgtgtatatgtctgtcatttatgtgtatgataa |
5743670 |
T |
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| Q |
315 |
atgctaataaaccgcgcacttgcatcaccacctgaaggaaacttggacccaagactttaaaaaagttgcccgaaaagatgattttcttcccagccatgaa |
414 |
Q |
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| T |
5743671 |
atgctaataa---------ttgtgtaa--accttaaggaaacttggacccaaggctttaaaaaagttgtccgaaaagatgattttcttcccagccatgaa |
5743759 |
T |
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| Q |
415 |
agtttttaatgtcttcacaactgcatcacaacatcgatcatgatttcatcaccattgaaacgtgatttcctgctatatcgaaaattgcaatgcgcacgca |
514 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
5743760 |
agtttttaatgtcttcacaactgcatcacaacatggatcatgatttcatcaccattgaaacgtgatttcctgctatatcgaaaattgcaatgggcacaca |
5743859 |
T |
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| Q |
515 |
atccaattgtaaaacctcgactaataattctttttacaataaacagactttgcggaagccttccacatcttcacgcaccctatgctac |
602 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
5743860 |
atccaattgtaaaacctcgactaatgattctttttacaataaacagactttgcggaagccttccatatcttcacgcacccaatgctac |
5743947 |
T |
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